Other Characterized Proteins Similar to rbsC

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to rbsC

Finding the characterized proteins for rbsC (D-ribose ABC transporter, permease component RbsC) in D-ribose catabolism

Or see clustering for step rbsC

Or see all steps for D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of rbsC

Curated sequence P0AGI1: Ribose import permease protein RbsC. Ribose transport system permease protein RbsC aka B3750, component of Ribose porter. ribose ABC transporter membrane subunit. ribose ABC transporter membrane subunit
Curated sequence Q9X050: ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose
UniProt sequence D8IUD2: SubName: Full=ABC-type sugar transport system, permease component protein {ECO:0000313|EMBL:ADJ63794.1};
UniProt sequence A0A1N7UNQ5: SubName: Full=ABC transporter permease {ECO:0000313|EMBL:AIB37519.1}; SubName: Full=Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:SFA82032.1};
UniProt sequence A0A166R405: SubName: Full=ABC transporter permease {ECO:0000313|EMBL:KZN21270.1};

Fetched 5 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 11 other characterized sequences. (Found 13 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for rbsC.)

TC 3.A.1.2.13 / A6VKS9 RbsC, component of The probable autoinducer-2 (AI-2;, a furanosyl borate diester: 3aS,6S,6aR)-2,2,6,6a-tetrahydroxy-3a-methyltetrahydrofuro[3,2-d][1,3,2]dioxaborolan-2-uide) uptake porter (Shao et al., 2007) (50-70% identical to RbsABC of E. coli; TC# 3.A.1.2.1) from Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
PFams: BPD_transp_2
Heteromeric, 322 amino acids: PaperBLAST, CDD, TCDB::A6VKS9
69% identical to

b3750 ribose ABC transporter membrane subunit from Escherichia coli K-12 substr. MG1655
P0AGI1 ribose ABC transporter membrane subunit from Escherichia coli (strain K12)
RBSC_ECOLI / P0AGI1 Ribose import permease protein RbsC from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P0AGI1 Ribose transport system permease protein RbsC aka B3750, component of Ribose porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 321 amino acids: PaperBLAST, CDD

TC 3.A.1.2.21 / B8H230 Inositol ABC transport system, permease protein IatP, component of The myoinositol (high affinity)/ D-ribose (low affinity) transporter IatP/IatA/IbpA. The structure of IbpA with myoinositol bound has been solved from Caulobacter crescentus (strain NA1000 / CB15N)
PFams: BPD_transp_2
Heteromeric, 332 amino acids: PaperBLAST, CDD, TCDB::B8H230
44% identical to

TC 3.A.1.2.19 / Q9X050 ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 331 amino acids: PaperBLAST, CDD

TC 3.A.1.2.16 / Q1M4Q8 Erythritol permease, component of ABC transporter, component of The erythritol uptake permease, EryEFG (Yost et al., 2006) (probably orthologous to 3.A.1.2.11) from Rhizobium leguminosarum bv. viciae (strain 3841)
PFams: BPD_transp_2
Heteromeric, 350 amino acids: PaperBLAST, CDD, TCDB::Q1M4Q8
43% identical to

TC 3.A.1.2.11 / Q92WK1 EryF aka RB0338, component of The erythritol permease, EryEFG (Geddes et al., 2010) (probably orthologous to 3.A.1.2.16) from Rhizobium meliloti (Sinorhizobium meliloti)
PFams: BPD_transp_2
Heteromeric, 354 amino acids: PaperBLAST, CDD, TCDB::Q92WK1
40% identical to

PS417_11895 Inositol transport system permease protein from Pseudomonas simiae WCS417
PFams: BPD_transp_2
340 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF2333
40% identical to

TC 3.A.1.2.18 / Q9WXW7 ABC-type transporter, integral membrane subunit, component of Xylose porter (Nanavati et al. 2006). Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 317 amino acids: PaperBLAST, CDD, TCDB::Q9WXW7
43% identical to

TC 3.A.1.2.20 / G4FGN4 Putative beta-xyloside ABC transporter, permease component, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 313 amino acids: PaperBLAST, CDD, TCDB::G4FGN4
41% identical to

AO353_21390 m-Inositol ABC transporter, permease component (iatP) from Pseudomonas fluorescens FW300-N2E3
PFams: BPD_transp_2
Heteromeric, 340 amino acids: PaperBLAST, CDD, reanno::pseudo3_N2E3:AO353_21390
40% identical to

b4086 D-allose ABC transporter membrane subunit (EC 7.5.2.8) from Escherichia coli K-12 substr. MG1655
P32720 D-allose ABC transporter membrane subunit (EC 7.5.2.8) from Escherichia coli (strain K12)
ALSC_ECOLI / P32720 D-allose transport system permease protein AlsC from Escherichia coli (strain K12)
TC 3.A.1.2.6 / P32720 AlsC aka B4086, component of D-allose porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 326 amino acids: PaperBLAST, CDD, SwissProt::P32720
41% identical to

b2148 D-galactose/methyl-galactoside ABC transporter membrane subunit from Escherichia coli K-12 substr. MG1655
P23200 D-galactose/methyl-galactoside ABC transporter membrane subunit from Escherichia coli (strain K12)
TC 3.A.1.2.3 / P23200 MglC aka B2148, component of Galactose/glucose (methyl galactoside) porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 336 amino acids: PaperBLAST, CDD, TCDB::P23200
40% identical to

b4230 galactofuranose ABC transporter putative membrane subunit YtfT (EC 7.5.2.9) from Escherichia coli K-12 substr. MG1655
P39328 galactofuranose ABC transporter putative membrane subunit YtfT (EC 7.5.2.9) from Escherichia coli (strain K12)
YTFT_ECOLI / P39328 Galactofuranose transporter permease protein YtfT from Escherichia coli (strain K12)
PFams: BPD_transp_2
Heteromeric, 341 amino acids: PaperBLAST, CDD, SwissProt::P39328
42% identical to