Other Characterized Proteins Similar to sdaB

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to sdaB

Finding the characterized proteins for sdaB (L-serine ammonia-lyase) in L-serine catabolism

Or see clustering for step sdaB

Or see all steps for L-serine catabolism

Or cluster curated proteins matching a keyword

Definition of sdaB

Curated proteins or TIGRFams with EC 4.3.1.17
Comment: Monomeric form (the heteromeric form is not in the database)

Fetched 32 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 21 other characterized sequences. (Found 53 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for sdaB.)

F5CAQ9 serine racemase (EC 5.1.1.18) from Zea mays
PFams: PALP
338 amino acids: PaperBLAST, CDD, BRENDA::F5CAQ9
89% identical to

SRR_ORYSJ / Q7XSN8 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Oryza sativa subsp. japonica (Rice)
Q7XSN8 serine racemase (EC 5.1.1.18) from Oryza sativa
PFams: PALP
339 amino acids: PaperBLAST, CDD

A5HUN0 serine racemase (EC 5.1.1.18) from Hordeum vulgare
A5HUN0 serine racemase (EC 5.1.1.18) from Hordeum vulgare
PFams: PALP
337 amino acids: PaperBLAST, CDD, metacyc::MONOMER-14687
88% identical to

LTHAD_YEAST / P36007 L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; EC 4.3.1.16 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PALP
326 amino acids: PaperBLAST, CDD, SwissProt::P36007
66% identical to

SRR_SCHPO / O59791 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O59791 serine racemase (EC 5.1.1.18) from Schizosaccharomyces pombe
PFams: PALP
323 amino acids: PaperBLAST, CDD

TD_NICAT / Q9AXU4 Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata (Coyote tobacco)
Q9AXU4 threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
601 amino acids: PaperBLAST, CDD, SwissProt::Q9AXU4
63% identical to

TD2_SOLLC / P25306 Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
595 amino acids: PaperBLAST, CDD

L0N5C4 threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp. N99
PFams: PALP
321 amino acids: PaperBLAST, CDD, BRENDA::L0N5C4
64% identical to

A4F2N8 L-threo-3-hydroxy aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.
LTHAD_PSESP / A4F2N8 L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp.
A4F2N8 threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp. T62
PFams: PALP
319 amino acids: PaperBLAST, CDD, SwissProt::A4F2N8
64% identical to

TD1_SOLLC / A0FKE6 Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
606 amino acids: PaperBLAST, CDD, SwissProt::A0FKE6
51% identical to

BHCB_PARDP / A1B8Z2 beta-hydroxyaspartate dehydratase; EC 4.2.1.- from Paracoccus denitrificans (strain Pd 1222)
PFams: PALP
315 amino acids: PaperBLAST, CDD, SwissProt::A1B8Z2
50% identical to

Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
SRR_ARATH / Q2PGG3 Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana (Mouse-ear cress)
Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
PFams: PALP
331 amino acids: PaperBLAST, CDD

Q54HH2 D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum
PFams: PALP
324 amino acids: PaperBLAST, CDD, BRENDA::Q54HH2
49% identical to

SRR_RAT / Q76EQ0 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus (Rat)
Q76EQ0 serine racemase (EC 5.1.1.18) from Rattus norvegicus
PFams: PALP
333 amino acids: PaperBLAST, CDD

F7ZG00 serine racemase (EC 5.1.1.18) from Roseobacter litoralis
PFams: PALP
323 amino acids: PaperBLAST, CDD, BRENDA::F7ZG00
49% identical to

A0A0U5AKI6 serine racemase (EC 5.1.1.18) from Crassostrea gigas
PFams: PALP
326 amino acids: PaperBLAST, CDD, BRENDA::A0A0U5AKI6
46% identical to

K1QH67 aspartate racemase (EC 5.1.1.13) from Crassostrea gigas
PFams: PALP
330 amino acids: PaperBLAST, CDD, BRENDA::K1QH67
45% identical to

A0A0U4MRI4 serine racemase (EC 5.1.1.18) from Penaeus monodon
PFams: PALP
330 amino acids: PaperBLAST, CDD, BRENDA::A0A0U4MRI4
44% identical to

CH_124219 threonine deaminase [Arxula adeninivorans] from Magnaporthe grisea 70-15
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
618 amino acids: PaperBLAST, CDD, CharProtDB::CH_124219
42% identical to

Q2V0H1 serine racemase (EC 5.1.1.18) from Pyrobaculum islandicum
PFams: PALP, ACT
402 amino acids: PaperBLAST, CDD, BRENDA::Q2V0H1
42% identical to

TDCB_SALTY / P11954 L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: PALP
329 amino acids: PaperBLAST, CDD

b1919 D-cysteine desulfhydrase (EC 4.4.1.15; EC 4.5.1.2) from Escherichia coli K-12 substr. MG1655
P76316 D-cysteine desulfhydrase (EC 4.4.1.15; EC 4.5.1.2) from Escherichia coli (strain K12)
DCYD_ECOLI / P76316 D-cysteine desulfhydrase; EC 4.4.1.15 from Escherichia coli (strain K12)
RF|NP_416429 D-cysteine desulfhydrase; EC 4.4.1.15 from Escherichia coli K12
PFams: PALP
328 amino acids: PaperBLAST, CDD, CharProtDB::CH_003017
41% identical to

O57809 L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii
PFams: PALP
325 amino acids: PaperBLAST, CDD

A0A0U5A554 aspartate racemase (EC 5.1.1.13) from Penaeus monodon
PFams: PALP
334 amino acids: PaperBLAST, CDD, BRENDA::A0A0U5A554
40% identical to

SRR_MOUSE / Q9QZX7 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus (Mouse)
Q9QZX7 serine racemase (EC 5.1.1.18) from Mus musculus
PFams: PALP
339 amino acids: PaperBLAST, CDD

V6QU65 threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
581 amino acids: PaperBLAST, CDD, BRENDA::V6QU65
40% identical to

A0QY48 L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis
PFams: PALP
316 amino acids: PaperBLAST, CDD

b3772 threonine deaminase (EC 4.3.1.19) from Escherichia coli K-12 substr. MG1655
P04968 threonine deaminase (EC 4.3.1.19) from Escherichia coli (strain K12)
ILVA_ECOLI / P04968 L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli (strain K12)
P04968 threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
514 amino acids: PaperBLAST, CDD, BRENDA::P04968
42% identical to

THDH_YEAST / P00927 Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
576 amino acids: PaperBLAST, CDD, SwissProt::P00927
43% identical to

THDH_SCHPO / O94634 Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
600 amino acids: PaperBLAST, CDD, SwissProt::O94634
40% identical to

A0QY48 L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis
PFams: PALP
316 amino acids: PaperBLAST, CDD