GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for sdaB (L-serine ammonia-lyase) in L-serine catabolism

Or see other characterized proteins similar to sdaB

Or see all steps for L-serine catabolism

Or cluster curated proteins matching a keyword

Definition of sdaB

Fetched 32 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 30 of these sequences

Found 3 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 316-423 amino acids (not heteromeric)

TSAL_GEOSL / Q74FW6 L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Q74FW6 threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
PFams: PALP, ACT_4
402 amino acids: PaperBLAST, CDD, Compare to cluster

A0QY48 L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis
PFams: PALP
316 amino acids: PaperBLAST, CDD, Compare to cluster

B1N2N4 L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica
PFams: PALP
423 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_SCHPO / O59791 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O59791 serine racemase (EC 5.1.1.18) from Schizosaccharomyces pombe
PFams: PALP
323 amino acids: PaperBLAST, CDD, Compare to cluster

Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
SRR_ARATH / Q2PGG3 Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana (Mouse-ear cress)
Q2PGG3 serine racemase (EC 5.1.1.18) from Arabidopsis thaliana
PFams: PALP
331 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_RAT / Q76EQ0 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus (Rat)
Q76EQ0 serine racemase (EC 5.1.1.18) from Rattus norvegicus
PFams: PALP
333 amino acids: PaperBLAST, CDD, Compare to cluster

Q96GA7 Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
SDSL_HUMAN / Q96GA7 Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens (Human)
Q96GA7 L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens
PFams: PALP
329 amino acids: PaperBLAST, CDD, Compare to cluster

Q9GZT4 Serine racemase (EC 5.1.1.18) from Homo sapiens
SRR_HUMAN / Q9GZT4 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens (Human)
Q9GZT4 serine racemase (EC 5.1.1.18) from Homo sapiens
PFams: PALP
340 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_MOUSE / Q9QZX7 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus (Mouse)
Q9QZX7 serine racemase (EC 5.1.1.18) from Mus musculus
PFams: PALP
339 amino acids: PaperBLAST, CDD, Compare to cluster

b3117 catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli K-12 substr. MG1655
P0AGF6 catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli (strain K12)
TDCB_ECOLI / P0AGF6 L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli (strain K12)
RF|NP_417587 threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli K12
PFams: PALP
329 amino acids: PaperBLAST, CDD, Compare to cluster

TDCB_SALTY / P11954 L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: PALP
329 amino acids: PaperBLAST, CDD, Compare to cluster

SRR_ORYSJ / Q7XSN8 Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Oryza sativa subsp. japonica (Rice)
Q7XSN8 serine racemase (EC 5.1.1.18) from Oryza sativa
PFams: PALP
339 amino acids: PaperBLAST, CDD, Compare to cluster

SDSL_MOUSE / Q8R238 Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus (Mouse)
PFams: PALP
329 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 449-466 amino acids (not heteromeric)

b1814 L-serine deaminase I (EC 4.3.1.17) from Escherichia coli K-12 substr. MG1655
P16095 L-serine deaminase I (EC 4.3.1.17) from Escherichia coli (strain K12)
P16095 L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli
PFams: SDH_beta, SDH_alpha
454 amino acids: PaperBLAST, CDD, Compare to cluster

b2797 L-serine deaminase II (EC 4.3.1.17) from Escherichia coli K-12 substr. MG1655
P30744 L-serine deaminase II (EC 4.3.1.17) from Escherichia coli (strain K12)
SDHM_ECOLI / P30744 L-serine dehydratase 2; SDH 2; L-serine deaminase 2; L-SD2; EC 4.3.1.17 from Escherichia coli (strain K12)
P30744 L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli
GB|AAC75839.1 L-serine dehydratase 2; EC 4.3.1.17 from Escherichia coli K12
PFams: SDH_beta, SDH_alpha
455 amino acids: PaperBLAST, CDD, Compare to cluster

b4471 L-serine deaminase III (EC 4.3.1.17) from Escherichia coli K-12 substr. MG1655
P42630 L-serine deaminase III (EC 4.3.1.17) from Escherichia coli (strain K12)
P42630 L-serine ammonia-lyase (EC 4.3.1.17) from Escherichia coli
PFams: SDH_beta, SDH_alpha
454 amino acids: PaperBLAST, CDD, Compare to cluster

Q5ZXE1 L-serine ammonia-lyase (EC 4.3.1.17) from Legionella pneumophila
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NQ09 L-serine dehydratase (EC 4.3.1.17) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
RF|YP_225930.1 L-serine ammonia-lyase; EC 4.3.1.17 from Corynebacterium glutamicum ATCC 13032
PFams: SDH_beta, SDH_alpha
449 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS19340 L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans PsJN
PFams: SDH_beta, SDH_alpha
462 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS20080 L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis 4G11
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

DvMF_0011 L-serine ammonia-lyase (EC 4.3.1.17) from Desulfovibrio vulgaris Miyazaki F
PFams: SDH_beta, SDH_alpha
459 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_929 L-serine ammonia-lyase (EC 4.3.1.17) from Acidovorax sp. GW101-3H11
PFams: SDH_beta, SDH_alpha
466 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4954 L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens GW456-L13
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_1013 L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens FW300-N1B4
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_15500 L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens FW300-N2E3
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_5557 L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens FW300-N2E2
PFams: SDH_beta, SDH_alpha
458 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 328-366 amino acids (not heteromeric)

A0A0X1KHE6 L-serine ammonia-lyase (EC 4.3.1.17) from Rhizomucor miehei
PFams: PALP
366 amino acids: PaperBLAST, CDD, Compare to cluster

P09367 L-serine ammonia-lyase (EC 4.3.1.17) from Rattus norvegicus
PFams: PALP
363 amino acids: PaperBLAST, CDD, Compare to cluster

P20132 L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
SDHL_HUMAN / P20132 L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens (Human)
P20132 L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens
PFams: PALP
328 amino acids: PaperBLAST, CDD, Compare to cluster

STDH_YEAST / P25379 Catabolic L-serine/threonine dehydratase; EC 4.3.1.17; EC 4.3.1.19 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PALP
360 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

O57809 L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii
PFams: PALP
325 amino acids: PaperBLAST, CDD

TD2_SOLLC / P25306 Threonine dehydratase 2 biosynthetic, chloroplastic; SlTD2; Threonine deaminase 2; EC 4.3.1.17; EC 4.3.1.19 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
PFams: PALP, Thr_dehydrat_C, Thr_dehydrat_C
595 amino acids: PaperBLAST, CDD