GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for mtlE (ABC transporter for polyols MtlEFGK, substrate-binding component MtlE) in D-sorbitol (glucitol) catabolism

Or see other characterized proteins similar to mtlE

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Definition of mtlE

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 433-443 amino acids (7/8 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.49 / O30491 MtlE, component of The polyol (mannitol, glucitol (sorbitol), arabitol (arabinitol; lyxitol)) uptake porter, MtlEFGK from Pseudomonas fluorescens
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.5 / O30831 SmoE, component of Hexitol (glucitol; mannitol) porter from Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16115 ABC transporter for D-Sorbitol, periplasmic substrate-binding component from Burkholderia phytofirmans PsJN
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 440 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c13210 ABC transporter for D-Sorbitol, periplasmic substrate-binding component from Phaeobacter inhibens BS107
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 433 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_12715 ABC transporter for D-Mannitol, D-Mannose, and D-Sorbitol, periplasmic substrate-binding protein from Pseudomonas simiae WCS417
PFams: SBP_bac_1, SBP_bac_8
440 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_2944 ABC transporter for D-Sorbitol, periplasmic substrate-binding component from Acidovorax sp. GW101-3H11
PFams: SBP_bac_1
Heteromeric, 443 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_00025 ABC transporter for D-Sorbitol, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2C3
PFams: SBP_bac_8, SBP_bac_1
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_1963 ABC transporter for D-sorbitol, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
PFams: SBP_bac_8, SBP_bac_1
Heteromeric, 436 amino acids: PaperBLAST, CDD, Compare to cluster