GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for srlD (sorbitol 6-phosphate 2-dehydrogenase) in D-sorbitol (glucitol) catabolism

Or see other characterized proteins similar to srlD

Or see all steps for D-sorbitol (glucitol) catabolism

Or cluster curated proteins matching a keyword

Definition of srlD

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 259-266 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

GI|2342569 sorbitol-6-phosphate dehydrogenase from Erwinia amylovora
PFams: adh_short, adh_short_C2
259 amino acids: PaperBLAST, CDD, Compare to cluster

b2705 sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli K-12 substr. MG1655
P05707 sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Escherichia coli (strain K12)
CH_091827 sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli K12
PFams: adh_short, adh_short_C2
259 amino acids: PaperBLAST, CDD, Compare to cluster

Q9X671 sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans
PFams: adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS22230 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis M5al
PFams: adh_short, adh_short_C2
259 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

BWI76_RS01745 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) from Klebsiella michiganensis M5al
PFams: adh_short, KR, adh_short_C2
267 amino acids: PaperBLAST, CDD
(similar to metacyc::MONOMER-13092 from Cluster 1, but similarity to seed sequence is below thresholds)