GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dctM (succinate TRAP transporter, large permease protein DctM) in succinate catabolism

Or see other characterized proteins similar to dctM

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Definition of dctM

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 427-467 amino acids (2/5 heteromeric)

The first sequence in each cluster is the seed.

DCTM_RHOCA / O07838 C4-dicarboxylate TRAP transporter large permease protein DctM from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
TC 2.A.56.1.1 / O07838 DctM, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: DctM
Heteromeric, 440 amino acids: PaperBLAST, CDD, Compare to cluster

DCTM_PSEAE / Q9HU16 C4-dicarboxylate TRAP transporter large permease protein DctM from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: DctM
427 amino acids: PaperBLAST, CDD, Compare to cluster

I7DRS6 TRAP transporter, subunit DctM
467 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KQS1 C4-dicarboxylate TRAP transporter large permease protein DctM
453 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_1444 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component from Shewanella loihica PV-4
PFams: DctM
Heteromeric, 465 amino acids: PaperBLAST, CDD, Compare to cluster