GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for sdc (succinate:Na+ symporter Sdc) in succinate catabolism

Or see other characterized proteins similar to sdc

Or see all steps for succinate catabolism

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Definition of sdc

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Bacillus licheniformis

TC 2.A.47.1.13 / Q65NC0 The Na+-coupled dicarboxylate (succinate; malate; fumarate) transporter, SdcL (transports aspartate, α-ketoglutarate and oxaloacetate with low affinity). Km for succinate, ~6 from Bacillus licheniformis (strain DSM 13 / ATCC 14580)
PFams: Na_sulph_symp, CitMHS
546 amino acids: PaperBLAST, CDD (Cluster 1)

Caenorhabditis elegans

NAD3_CAEEL / Q21339 Sodium-dependent high-affinity dicarboxylate transporter 3; Na(+)/dicarboxylate cotransporter 3; NaDC-3; ceNaDC3 from Caenorhabditis elegans
TC 2.A.47.1.8 / Q21339 High affinity dicarboxylate:Na+ symporter, NaDC2 (INDY2) (relative affinities: fumarate > malate > α-ketoglutarate > maleate > succinate > lactate)
PFams: Na_sulph_symp, CitMHS
566 amino acids: PaperBLAST, CDD (Cluster 1)

Corynebacterium glutamicum

TC 2.A.47.1.12 / A4QAL6 The aerobic dicarboxylate (succinate (Km, 30 μM), fumarate (Km, 79 from Corynebacterium glutamicum (strain R)
PFams: Na_sulph_symp, CitMHS
527 amino acids: PaperBLAST, CDD (Cluster 1)

Staphylococcus aureus

SDCS_STAAM / Q99SX1 Sodium-dependent dicarboxylate transporter SdcS; Na(+)/dicarboxylate symporter from Staphylococcus aureus (strain Mu50 / ATCC 700699)
PFams: Na_sulph_symp, CitMHS
520 amino acids: PaperBLAST, CDD (Cluster 1)

TC 2.A.47.1.11 / Q2FFH9 The Na+ (or Li+):dicarboxylate (2:1) symporter, SdcS (catalyzes succinate:succinate antiport as well as electroneutral symport in reconstituted proteoliposomes from Staphylococcus aureus (strain USA300)
PFams: Na_sulph_symp, CitMHS
520 amino acids: PaperBLAST, CDD (Cluster 1)

Vibrio cholerae

TC 2.A.47.5.2 / Q9KNE0 Dicarboxylate (succinate, fumarate, malate) transporter, vcINDY from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: Na_sulph_symp, CitMHS
462 amino acids: PaperBLAST, CDD (Cluster 1)