GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for aglF (sucrose ABC transporter, permease component 1 (AglF)) in sucrose catabolism

Or see other characterized proteins similar to aglF

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Definition of aglF

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 334-336 amino acids (1/2 heteromeric)

The first sequence in each cluster is the seed.

A8LLL5 Inner membrane ABC transporter permease protein
334 amino acids: PaperBLAST, CDD, Compare to cluster

SMc03062 ABC transporter for D-Maltose and D-Trehalose, permease component 1 from Sinorhizobium meliloti 1021
TC 3.A.1.1.8 / Q9Z3R6 AglF aka R00696 aka SMC03062, component of Sucrose/maltose/trehalose porter (sucrose-inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
PFams: BPD_transp_1
Heteromeric, 336 amino acids: PaperBLAST, CDD, Compare to cluster