GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for levG (fructose PTS system (fructose 6-phosphate forming), EII-D component) in sucrose catabolism

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Definition of levG

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 275-304 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 4.A.6.1.2 / P26382 PTFD aka LEVG, component of Fructose group translocator, LevDEFG from Bacillus subtilis
Heteromeric, 275 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.6.1.1 / P69805 PTND aka MANZ aka PTSM aka GPTB aka B1819, component of The mannose (glucose, 2-deoxyglucose, glucosamine, N-acetylglucosamine, N-acetylmannosamine, mannosamine and fructose) PTS porter/group translocator, ManXYZ (Rephaeli and Saier 1980; Plumbridge 2015). Catalyzes xylose facilitated diffusion in lactobacilli. The order of D-sugar substrate affinities is: glucose > mannose > 2-deoxyglucose > N-acetylglucosamine > glucosamine > N-acetylmannosamine > mannosamine > fructose from Escherichia coli
Heteromeric, 286 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.6.1.10 / Q04GJ9 PTS system IID component, Man family, component of The hexose (glucose and fructose demonstrated) PTS uptake system from Oenococcus oeni (strain BAA-331 / PSU-1)
Heteromeric, 304 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.6.1.7 / Q5M5W8 ManN, component of The glucose/mannose/2-deoxyglucose/fructose phosphotransferase systems (phosphorylates without transport), ManLMN from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Heteromeric, 303 amino acids: PaperBLAST, CDD, Compare to cluster