GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for thuF (sucrose ABC transporter, permease component 1 (ThuF)) in sucrose catabolism

Or see other characterized proteins similar to thuF

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Definition of thuF

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 291-328 amino acids (2/3 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.25 / Q72H67 Maltose transport system permease protein malF aka TT_C1628, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 291 amino acids: PaperBLAST, CDD, Compare to cluster

A0A166QFV1 ABC transporter permease
320 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.17 / Q9R9Q6 ThuF aka RB0312 aka SMB20326, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
SM_b20326 ABC transporter for D-Trehalose, permease component 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 328 amino acids: PaperBLAST, CDD, Compare to cluster