GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for thuG (sucrose ABC transporter, permease component 2 (ThuG)) in sucrose catabolism

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Definition of thuG

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Organism unknown

A0A161ZE72 Sugar ABC transporter permease
280 amino acids: PaperBLAST, CDD (Cluster 1)

Rhizobium meliloti

TC 3.A.1.1.17 / Q9R9Q5 ThuG aka RB0313 aka SMB20327, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
SM_b20327 ABC transporter for D-Trehalose, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 276 amino acids: PaperBLAST, CDD (Cluster 1)

Sinorhizobium meliloti

TC 3.A.1.1.17 / Q9R9Q5 ThuG aka RB0313 aka SMB20327, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
SM_b20327 ABC transporter for D-Trehalose, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 276 amino acids: PaperBLAST, CDD (Cluster 1)

Thermus thermophilus

TC 3.A.1.1.25 / Q72H66 Maltose transport system permease protein malG aka TT_C1629, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 280 amino acids: PaperBLAST, CDD (Cluster 1)