GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gcvP (glycine cleavage system, P component (glycine decarboxylase)) in L-threonine catabolism

Or see other characterized proteins similar to gcvP

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Definition of gcvP

Fetched 15 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 15 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 946-1060 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A9PL02 glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Populus tremuloides
PFams: GDC-P, GDC-P
1060 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP_HUMAN / P23378 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Homo sapiens (Human)
P23378 glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens
P23378 Glycine dehydrogenase [decarboxylating], mitochondrial (EC 1.4.4.2) from Homo sapiens
PFams: GDC-P, GDC-P, Beta_elim_lyase
1020 amino acids: PaperBLAST, CDD, Compare to cluster

b2903 glycine decarboxylase (EC 1.4.4.2) from Escherichia coli K-12 substr. MG1655
GCSP_ECOLI / P33195 Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli (strain K12)
P33195 glycine decarboxylase (EC 1.4.4.2) from Escherichia coli (strain K12)
CH_003480 glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli K12
PFams: GDC-P, GDC-P, Beta_elim_lyase
957 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP2_ARATH / O80988 Glycine dehydrogenase (decarboxylating) 2, mitochondrial; Glycine cleavage system P protein 2; Glycine decarboxylase 2; Glycine decarboxylase P-protein 2; AtGLDP2; Glycine dehydrogenase (aminomethyl-transferring) 2; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress)
PFams: GDC-P, GDC-P
1044 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP_CHICK / P15505 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus (Chicken)
P15505 glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Gallus gallus
P15505 glycine decarboxylase subunit (EC 1.4.4.2) from Gallus gallus
PFams: GDC-P, GDC-P, Beta_elim_lyase, Aminotran_5
1004 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP_PEA / P26969 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Pisum sativum (Garden pea)
PFams: GDC-P, GDC-P
1057 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP_YEAST / P49095 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine decarboxylase complex subunit P; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: GDC-P, GDC-P
1034 amino acids: PaperBLAST, CDD, Compare to cluster

GCSPA_FLAPR / P49361 Glycine dehydrogenase (decarboxylating) A, mitochondrial; Glycine cleavage system P protein A; Glycine decarboxylase A; Glycine dehydrogenase (aminomethyl-transferring) A; EC 1.4.4.2 from Flaveria pringlei
PFams: GDC-P, GDC-P
1037 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP_SCHPO / Q09785 Putative glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: GDC-P, GDC-P
1031 amino acids: PaperBLAST, CDD, Compare to cluster

GCSP1_ARATH / Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress)
PFams: GDC-P, GDC-P
1037 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis M5al
PFams: GDC-P, GDC-P, Beta_elim_lyase
957 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae WCS417
PFams: GDC-P, GDC-P
946 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1868 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens GW456-L13
PFams: GDC-P, GDC-P, Beta_elim_lyase
950 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_03500 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens FW300-N2E3
PFams: GDC-P, GDC-P, Beta_elim_lyase
950 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens FW300-N2E2
PFams: GDC-P, GDC-P, Beta_elim_lyase
953 amino acids: PaperBLAST, CDD, Compare to cluster