GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gcvT (glycine cleavage system, T component (tetrahydrofolate aminomethyltransferase)) in L-threonine catabolism

Or see other characterized proteins similar to gcvT

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Or cluster curated proteins matching a keyword

Definition of gcvT

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 364-403 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b2905 aminomethyltransferase (EC 2.1.2.10) from Escherichia coli K-12 substr. MG1655
P27248 aminomethyltransferase (EC 2.1.2.10) from Escherichia coli (strain K12)
GCST_ECOLI / P27248 Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli (strain K12)
CH_000563 aminomethyltransferase; EC 2.1.2.10 from Escherichia coli K12
PFams: GCV_T, GCV_T_C
364 amino acids: PaperBLAST, CDD, Compare to cluster

P28337 aminomethyltransferase (EC 2.1.2.10) from Gallus gallus
GCST_CHICK / P28337 Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Gallus gallus (Chicken)
PFams: GCV_T, GCV_T_C
392 amino acids: PaperBLAST, CDD, Compare to cluster

GCST_YEAST / P48015 Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; Glycine decarboxylase complex subunit T; EC 2.1.2.10 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: GCV_T, GCV_T_C
400 amino acids: PaperBLAST, CDD, Compare to cluster

P48728 aminomethyltransferase (EC 2.1.2.10) from Homo sapiens
GCST_HUMAN / P48728 Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens (Human)
PFams: GCV_T, GCV_T_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS23880 Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis M5al
PFams: GCV_T, GCV_T_C
364 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22370 Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae WCS417
PFams: GCV_T, GCV_T_C
374 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1866 Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens GW456-L13
PFams: GCV_T, GCV_T_C
374 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_5556 Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens FW300-N2E2
PFams: GCV_T, GCV_T_C
374 amino acids: PaperBLAST, CDD, Compare to cluster