GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for hpcD (3-hydroxypropionyl-CoA dehydratase) in L-threonine catabolism

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Definition of hpcD

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by cluster

Candida albicans

A0A1D8PJ13 D-specific enoyl-CoA hydratase (EC 4.2.1.119; EC 4.2.1.116) from Candida albicans (strain SC5314 / ATCC MYA-2876)
PFams: adh_short, KR, adh_short_C2, adh_short, KR, adh_short_C2, MaoC_dehydratas
906 amino acids: PaperBLAST, CDD (Singleton 3)

Chloroflexus aurantiacus

A9WEU4 propionyl-CoA synthase subunit (EC 1.3.1.84; EC 4.2.1.116; EC 6.2.1.36) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
PFams: ACAS_N, AMP-binding, AMP-binding_C, ECH_1, ECH_2
1822 amino acids: PaperBLAST, CDD (Singleton 2)

Metallosphaera sedula

HPCD_METS5 / A4YI89 3-hydroxypropionyl-coenzyme A dehydratase; 3-hydroxypropionyl-CoA dehydratase; EC 4.2.1.116 from Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2)
A4YI89 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula
A4YI89 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) from Metallosphaera sedula (strain ATCC 51363 / DSM 5348 / JCM 9185 / NBRC 15509 / TH2)
PFams: ECH_1, ECH_2
259 amino acids: PaperBLAST, CDD (Singleton 1)