GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for mcm-small (methylmalonyl-CoA mutase, small (adenosylcobamide-binding) subunit) in L-threonine catabolism

Or see other characterized proteins similar to mcm-small

Or see all steps for L-threonine catabolism

Or cluster curated proteins matching a keyword

Definition of mcm-small

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 147-155 amino acids (heteromeric)

The first sequence in each cluster is the seed.

A4YIE3 methylmalonyl-CoA mutase (subunit 1/2) (EC from Metallosphaera sedula
PFams: B12-binding
Heteromeric, 155 amino acids: PaperBLAST, CDD, Compare to cluster

O58013 methylmalonyl-CoA mutase (subunit 1/2) (EC from Pyrococcus horikoshii
PFams: B12-binding
Heteromeric, 147 amino acids: PaperBLAST, CDD, Compare to cluster