GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pccA (propionyl-CoA carboxylase, alpha subunit) in L-threonine catabolism

Or see other characterized proteins similar to pccA

Or see all steps for L-threonine catabolism

Or cluster curated proteins matching a keyword

Definition of pccA

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 601-737 amino acids (7/10 heteromeric)

The first sequence in each cluster is the seed.

PCCA_HUMAN / P05165 Propionyl-CoA carboxylase alpha chain, mitochondrial; PCCase subunit alpha; Propanoyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.3 from Homo sapiens (Human)
P05165 propionyl-CoA carboxylase (subunit 1/2) (EC 6.4.1.3) from Homo sapiens
P05165 propionyl-CoA carboxylase α chain, mitochondrial (EC 6.4.1.3) from Homo sapiens
PFams: Biotin_carb_N, CPSase_L_D2, RimK, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
Heteromeric, 728 amino acids: PaperBLAST, CDD, Compare to cluster

PCCA_CAEEL / Q19842 Propionyl-CoA carboxylase alpha chain, mitochondrial; PCCase subunit alpha; Propanoyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.3 from Caenorhabditis elegans
Q19842 propionyl-CoA carboxylase (subunit 2/2) (EC 6.4.1.3) from Caenorhabditis elegans
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
Heteromeric, 724 amino acids: PaperBLAST, CDD, Compare to cluster

PCCA_HALMT / I3R7G3 Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit; PCC; EC 6.4.1.3; EC 6.3.4.14 from Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) (Halobacterium mediterranei)
I3R7G3 propionyl-CoA carboxylase (subunit 3/3) (EC 6.4.1.3) from Haloferax mediterranei
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 601 amino acids: PaperBLAST, CDD, Compare to cluster

PCCA_PIG / P0DTA4 Propionyl-CoA carboxylase alpha chain, mitochondrial; PCCase subunit alpha; Propanoyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.3 from Sus scrofa (Pig)
PFams: Biotin_carb_N, CPSase_L_D2, RimK, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
730 amino acids: PaperBLAST, CDD, Compare to cluster

PCCA_RUEPO / Q5LUF3 Propionyl-CoA carboxylase alpha chain; EC 6.4.1.3 from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi)
Q5LUF3 propionyl-CoA carboxylase (EC 6.4.1.3) from Ruegeria pomeroyi
PFams: Biotin_carb_N, CPSase_L_D2, RimK, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
681 amino acids: PaperBLAST, CDD, Compare to cluster

PCCA_MOUSE / Q91ZA3 Propionyl-CoA carboxylase alpha chain, mitochondrial; PCCase subunit alpha; Propanoyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.3 from Mus musculus (Mouse)
PFams: Biotin_carb_N, CPSase_L_D2, RimK, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
724 amino acids: PaperBLAST, CDD, Compare to cluster

Q3J4D9 propionyl-CoA carboxylase α subunit (EC 6.4.1.3) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl, Biotin_lipoyl_2
Heteromeric, 666 amino acids: PaperBLAST, CDD, Compare to cluster

P14882 propionyl-CoA carboxylase α subunit (EC 6.4.1.3) from Rattus norvegicus
PFams: Biotin_carb_N, CPSase_L_D2, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
Heteromeric, 737 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_0723 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) from Dinoroseobacter shibae DFL-12
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
Heteromeric, 681 amino acids: PaperBLAST, CDD, Compare to cluster

Dsui_0516 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) from Dechlorosoma suillum PS
PFams: Biotin_carb_N, CPSase_L_D2, Dala_Dala_lig_C, Biotin_carb_C, PCC_BT, Biotin_lipoyl
Heteromeric, 663 amino acids: PaperBLAST, CDD, Compare to cluster