GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to tdcB

Finding the characterized proteins for tdcB (L-threonine dehydratase) in L-threonine catabolism

Or see clustering for step tdcB

Or see all steps for L-threonine catabolism

Or cluster curated proteins matching a keyword

Definition of tdcB

Fetched 20 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 23 hits including self hits.)

There are also 2 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for tdcB.)

P09367 L-serine ammonia-lyase (EC 4.3.1.17) from Rattus norvegicus
PFams: PALP
363 amino acids: PaperBLAST, CDD, BRENDA::P09367
84% identical to

P20132 L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
SDHL_HUMAN / P20132 L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens (Human)
P20132 L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens
PFams: PALP
328 amino acids: PaperBLAST, CDD

A0A0X1KHE6 L-serine ammonia-lyase (EC 4.3.1.17) from Rhizomucor miehei
PFams: PALP
366 amino acids: PaperBLAST, CDD, BRENDA::A0A0X1KHE6
42% identical to

P20132 L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
SDHL_HUMAN / P20132 L-serine dehydratase/L-threonine deaminase; SDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens (Human)
P20132 L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens
PFams: PALP
328 amino acids: PaperBLAST, CDD

A0QY48 L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis
PFams: PALP
316 amino acids: PaperBLAST, CDD, BRENDA::A0QY48
40% identical to

TSAL_GEOSL / Q74FW6 L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Q74FW6 threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
PFams: PALP, ACT_4
402 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for tdcB, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

Q2V0H1 serine racemase (EC 5.1.1.18) from Pyrobaculum islandicum
PFams: PALP, ACT
402 amino acids: PaperBLAST, CDD

B1N2N4 L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica
PFams: PALP
423 amino acids: PaperBLAST, CDD