GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for tdcE (2-ketobutyrate formate-lyase) in L-threonine catabolism

Or see other characterized proteins similar to tdcE

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Or cluster curated proteins matching a keyword

Definition of tdcE

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 760-764 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b0903 pyruvate formate-lyase from Escherichia coli K-12 substr. MG1655
P09373 formate C-acetyltransferase (EC from Escherichia coli
PFams: PFL-like, Gly_radical
760 amino acids: PaperBLAST, CDD, Compare to cluster

TDCE_ECOLI / P42632 PFL-like enzyme TdcE; Keto-acid formate acetyltransferase; Keto-acid formate-lyase; Ketobutyrate formate-lyase; KFL; Pyruvate formate-lyase; PFL; EC 2.3.1.-; EC from Escherichia coli (strain K12)
EW|b3114 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase from Escherichia coli K12
PFams: PFL-like, Gly_radical
764 amino acids: PaperBLAST, CDD, Compare to cluster