GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ackA (acetate kinase) in thymidine catabolism

Or see other characterized proteins similar to ackA

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Definition of ackA

Fetched 25 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 22 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 390-433 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A2RNG4 acetate kinase (EC 2.7.2.1) from Lactococcus lactis
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

A2RNG5 acetate kinase (EC 2.7.2.1) from Lactococcus lactis
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

C4M1C3 acetate kinase (EC 2.7.2.1); acetate kinase (diphosphate) (EC 2.7.2.12) from Entamoeba histolytica
PFams: Acetate_kinase
392 amino acids: PaperBLAST, CDD, Compare to cluster

E3W769 acetate kinase (EC 2.7.2.1) from Shewanella sp.
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

G4T0C7 acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

J9W3A6 acetate kinase (EC 2.7.2.1) from Cryptococcus neoformans
PFams: Acetate_kinase
430 amino acids: PaperBLAST, CDD, Compare to cluster

TDCD_SALTY / O06961 Propionate kinase; EC 2.7.2.15 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O06961 propionate kinase (EC 2.7.2.15) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Acetate_kinase
402 amino acids: PaperBLAST, CDD, Compare to cluster

b2296 acetate kinase (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli K-12 substr. MG1655
P0A6A3 acetate kinase (EC 2.7.2.1) from Escherichia coli
P0A6A3 acetate kinase (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli (strain K12)
RF|NP_416799 acetate kinase; EC 2.7.2.1 from Escherichia coli K12
PFams: Acetate_kinase
400 amino acids: PaperBLAST, CDD, Compare to cluster

P0CW04 acetate kinase (EC 2.7.2.1) from Methanosarcina mazei
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

P0CW05 acetate kinase (EC 2.7.2.1) from Methanosarcina mazei
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_METTE / P38502 Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502 acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_SALTY / P63411 Acetate kinase; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63411 acetate kinase (EC 2.7.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Acetate_kinase
400 amino acids: PaperBLAST, CDD, Compare to cluster

P75245 acetate kinase (EC 2.7.2.1) from Mycoplasma pneumoniae
P75245 acetate kinase (EC 2.7.2.15) from Mycoplasma pneumoniae (strain ATCC 29342 / M129)
PFams: Acetate_kinase
390 amino acids: PaperBLAST, CDD, Compare to cluster

Q9F1X7 acetate kinase (EC 2.7.2.1) from Lactobacillus sanfranciscensis
PFams: Acetate_kinase
397 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_THEMA / Q9WYB1 Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Q9WYB1 acetate kinase (EC 2.7.2.1) from Thermotoga maritima
PDB|2IIR_A acetate kinase; EC 2.7.2.1 from Thermotoga maritima
PFams: Acetate_kinase
403 amino acids: PaperBLAST, CDD, Compare to cluster

b3115 propionate kinase (EC 2.7.2.1; EC 2.7.2.15) from Escherichia coli K-12 substr. MG1655
TDCD_ECOLI / P11868 Propionate kinase; EC 2.7.2.15 from Escherichia coli (strain K12)
P11868 propionate kinase (EC 2.7.2.1) from Escherichia coli (strain K12)
PFams: Acetate_kinase
402 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_BACSU / P37877 Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis (strain 168)
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

PDUW_SALTY / P74879 Probable propionate kinase; EC 2.7.2.15 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P74879 propionate kinase (EC 2.7.2.1) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Acetate_kinase
404 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_CORGL / P77845 Acetate kinase; Acetokinase; EC 2.7.2.1 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: Acetate_kinase
397 amino acids: PaperBLAST, CDD, Compare to cluster

P71104 acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

A8J000 acetate kinase (EC 2.7.2.15) from Chlamydomonas reinhardtii
PFams: Acetate_kinase
433 amino acids: PaperBLAST, CDD, Compare to cluster

E3PRH0 acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654)
PFams: Acetate_kinase
399 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

b1849 phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli K-12 substr. MG1655
PURT_ECOLI / P33221 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 2.1.2.- from Escherichia coli (strain K12)
P33221 phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15) from Escherichia coli (strain K12)
PFams: ATP-grasp_3, ATP-grasp, CPSase_L_D2, Dala_Dala_lig_C
392 amino acids: PaperBLAST, CDD

Q9ZFV5 acetate kinase (EC 2.7.2.15) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: EutQ, Cupin_3
229 amino acids: PaperBLAST, CDD

P0A208 acetate kinase EutP (EC 2.7.2.15) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: PduV-EutP
159 amino acids: PaperBLAST, CDD