GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ald-dh-CoA (acetaldehyde dehydrogenase, acylating) in thymidine catabolism

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Definition of ald-dh-CoA

Fetched 23 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 23 of these sequences

Found 3 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 859-954 amino acids (not heteromeric)

A0A0H3W5K4 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1 alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
859 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H3W5U9 alcohol dehydrogenase [NAD(P)+] (EC 1.1.1.71); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Hungateiclostridium thermocellum
A3DCI2 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Hungateiclostridium thermocellum
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
873 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1D3TRQ6 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
871 amino acids: PaperBLAST, CDD, Compare to cluster

B0K4A2 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp. X514
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
872 amino acids: PaperBLAST, CDD, Compare to cluster

C7IV28 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter ethanolicus
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
872 amino acids: PaperBLAST, CDD, Compare to cluster

Q70YJ9 alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Polytomella sp. Pringsheim 198.80
PFams: Aldedh, Fe-ADH
885 amino acids: PaperBLAST, CDD, Compare to cluster

ADH2_ENTHI / Q24803 Aldehyde-alcohol dehydrogenase 2; EC 1.1.1.1; EC 1.2.1.10 from Entamoeba histolytica
GB|AAA81906.1 aldehyde-alcohol dehydrogenase 2; EC 1.1.1.1; EC 1.2.1.10 from Entamoeba histolytica
PFams: Aldedh, Fe-ADH, Fe-ADH_2, Fe-ADH_2
870 amino acids: PaperBLAST, CDD, Compare to cluster

ADHE_CLOAB / P33744 Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
P33744 alcohol/aldehyde dehydrogenase (EC 1.1.1.1; EC 1.2.1.10; EC 1.2.1.57) from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GB|AAD04638.1 aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.10 from Clostridium acetobutylicum ATCC 824
PFams: Aldedh, Fe-ADH
862 amino acids: PaperBLAST, CDD, Compare to cluster

b1241 aldehyde/alcohol dehydrogenase AdhE (EC 1.1.1.1; EC 1.2.1.10) from Escherichia coli K-12 substr. MG1655
P0A9Q7 aldehyde/alcohol dehydrogenase AdhE (EC 1.1.1.1; EC 1.2.1.10) from Escherichia coli (strain K12)
MB|P0A9Q7 aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.10 from Escherichia coli K12
PFams: Aldedh, Fe-ADH, Fe-ADH_2
891 amino acids: PaperBLAST, CDD, Compare to cluster

A8JI07 alcohol dehydrogenase / acetaldehyde dehydrogenase (EC 1.2.1.10; EC 1.1.1.1) from Chlamydomonas reinhardtii
PFams: Aldedh, Fe-ADH, Fe-ADH_2
954 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 300-316 amino acids (2/9 heteromeric)

ACDH_THET8 / Q53WH9 Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; Propanal dehydrogenase (CoA-propanoylating); Propanaldehyde dehydrogenase; EC 1.2.1.10; EC 1.2.1.87 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Q53WH9 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10); propanal dehydrogenase (CoA-propanoylating) (EC 1.2.1.87) from Thermus thermophilus
PFams: GFO_IDH_MocA, Semialdhyde_dh, AcetDehyd-dimer
307 amino acids: PaperBLAST, CDD, Compare to cluster

ACDH4_PARXL / Q79AF6 Acetaldehyde dehydrogenase 4; Acetaldehyde dehydrogenase [acetylating] 4; Propanal dehydrogenase (CoA-propanoylating); EC 1.2.1.10; EC 1.2.1.87 from Paraburkholderia xenovorans (strain LB400)
Q79AF6 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10); propanal dehydrogenase (CoA-propanoylating) (EC 1.2.1.87) from Paraburkholderia xenovorans
PFams: Semialdhyde_dh, AcetDehyd-dimer
Heteromeric, 304 amino acids: PaperBLAST, CDD, Compare to cluster

b0351 acetaldehyde dehydrogenase (acetylating) MhpF (EC 1.2.1.10) from Escherichia coli K-12 substr. MG1655
ACDH_ECOLI / P77580 Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 from Escherichia coli (strain K12)
P77580 acetaldehyde dehydrogenase (acetylating) MhpF (EC 1.2.1.10) from Escherichia coli (strain K12)
GB|AAZ87107.1 acetaldehyde dehydrogenase; EC 1.2.1.10 from Escherichia coli K12
PFams: Semialdhyde_dh, AcetDehyd-dimer
316 amino acids: PaperBLAST, CDD, Compare to cluster

ACDH_PSEUF / Q52060 Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 from Pseudomonas sp. (strain CF600)
Q52060 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Pseudomonas sp.
Q52060 acetaldehyde dehydrogenase (acylating) (EC 1.2.1.10) from Pseudomonas sp. (strain CF600)
PFams: Semialdhyde_dh, AcetDehyd-dimer
Heteromeric, 312 amino acids: PaperBLAST, CDD, Compare to cluster

ACDH_PSESP / Q9KWS1 Acetaldehyde dehydrogenase; Acetaldehyde dehydrogenase [acetylating]; EC 1.2.1.10 from Pseudomonas sp.
PFams: Semialdhyde_dh, AcetDehyd-dimer
316 amino acids: PaperBLAST, CDD, Compare to cluster

P9WQH3 propanal dehydrogenase (EC 1.2.1.87) (from HMM only) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: Semialdhyde_dh, AcetDehyd-dimer
303 amino acids: PaperBLAST, CDD, Compare to cluster

Q51949 acylating aldehyde dehydrogenase (EC 1.2.1.10) from Pseudomonas putida
PFams: Semialdhyde_dh, AcetDehyd-dimer
316 amino acids: PaperBLAST, CDD, Compare to cluster

Q0S816 propanal dehydrogenase (EC 1.2.1.87) (from HMM only) from Rhodococcus jostii (strain RHA1)
PFams: Semialdhyde_dh, AcetDehyd-dimer
300 amino acids: PaperBLAST, CDD, Compare to cluster

Q83VZ4 propanal dehydrogenase (EC 1.2.1.87) (from HMM only) from Comamonas testosteroni
PFams: Semialdhyde_dh, AcetDehyd-dimer
307 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 466-484 amino acids (not heteromeric)

B0K315 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.
PFams: Aldedh
466 amino acids: PaperBLAST, CDD, Compare to cluster

b2455 acetaldehyde dehydrogenase (acetylating) EutE (EC 1.2.1.10) from Escherichia coli K-12 substr. MG1655
P77445 acetaldehyde dehydrogenase (acetylating) EutE (EC 1.2.1.10) from Escherichia coli (strain K12)
PFams: Aldedh
467 amino acids: PaperBLAST, CDD, Compare to cluster

E5Y379 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Bilophila wadsworthia 3_1_6
PFams: Aldedh
484 amino acids: PaperBLAST, CDD, Compare to cluster

P41793 acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Aldedh
467 amino acids: PaperBLAST, CDD, Compare to cluster