GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for deoB (phosphopentomutase) in thymidine catabolism

Or see other characterized proteins similar to deoB

Or see all steps for thymidine catabolism

Or cluster curated proteins matching a keyword

Definition of deoB

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by cluster

Bacillus cereus

Q818Z9 phosphopentomutase (EC 5.4.2.7) from Bacillus cereus
PFams: Metalloenzyme
394 amino acids: PaperBLAST, CDD (Cluster 1)

Dinoroseobacter shibae

Dshi_0829 Phosphopentomutase (EC 5.4.2.7) from Dinoroseobacter shibae DFL-12
PFams: Metalloenzyme
399 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b4383 phosphopentomutase (EC 5.4.2.7) from Escherichia coli K-12 substr. MG1655
P0A6K6 phosphopentomutase (EC 5.4.2.7) from Escherichia coli (strain K12)
P0A6K6 phosphopentomutase (EC 5.4.2.7) from Escherichia coli
RF|NP_418800 phosphopentomutase; EC 5.4.2.7 from Escherichia coli K12
CH_088295 phosphopentomutase; EC 5.4.2.7 from Escherichia coli K12
PFams: Metalloenzyme
407 amino acids: PaperBLAST, CDD (Cluster 1)

Homo sapiens

Q96G03 phosphoglucomutase-2 (EC 5.4.2.2; EC 5.4.2.7) from Homo sapiens
PGM2_HUMAN / Q96G03 Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Homo sapiens (Human)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
612 amino acids: PaperBLAST, CDD (Cluster 2)

Lysinibacillusaericus

B3ITC5 phosphopentomutase (EC 5.4.2.7) from Lysinibacillus sphaericus
PFams: Metalloenzyme
393 amino acids: PaperBLAST, CDD (Cluster 1)

Mus musculus

PGM2_MOUSE / Q7TSV4 Phosphoglucomutase-2; PGM 2; Glucose phosphomutase 2; Phosphodeoxyribomutase; Phosphoglucomutase-1; Phosphopentomutase; EC 5.4.2.2; EC 5.4.2.7 from Mus musculus (Mouse)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
620 amino acids: PaperBLAST, CDD (Cluster 2)

Saccharomyces cerevisiae

PGM3_YEAST / Q03262 Phosphoribomutase; PRM; Phosphoglucomutase 3; PGM 3; EC 5.4.2.7 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
622 amino acids: PaperBLAST, CDD (Cluster 2)

Schizosaccharomyces pombe

PGM3_SCHPO / O74478 Probable phosphoribomutase; PRM; Phosphoglucomutase 3 homolog; PGM 3 homolog; EC 5.4.2.7 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_III, PGM_PMM_IV
587 amino acids: PaperBLAST, CDD (Cluster 2)

Shewanella oneidensis

SO1219 Phosphopentomutase (EC 5.4.2.7) from Shewanella oneidensis MR-1
PFams: Metalloenzyme
404 amino acids: PaperBLAST, CDD (Cluster 1)

Streptococcus pneumoniae

DEOB_STRR6 / Q8DQD0 Phosphopentomutase; Phosphodeoxyribomutase; EC 5.4.2.7 from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
PFams: Metalloenzyme
403 amino acids: PaperBLAST, CDD (Cluster 1)

Thermococcus kodakarensis

PPM_THEKO / Q6I7B6 Phosphopentomutase; PPM; EC 5.4.2.7 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Q6I7B6 phosphopentomutase (EC 5.4.2.7) from Thermococcus kodakarensis
PFams: PGM_PMM_I, PGM_PMM_II, PGM_PMM_IV
450 amino acids: PaperBLAST, CDD (Singleton 1)

Thermotoga maritima

Q9WY14 phosphopentomutase (EC 5.4.2.7) from Thermotoga maritima
PFams: Metalloenzyme
390 amino acids: PaperBLAST, CDD (Cluster 1)