GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for deoC (deoxyribose-5-phosphate aldolase) in thymidine catabolism

Or see other characterized proteins similar to deoC

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Definition of deoC

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 19 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 220-262 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

C7E719 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.
PFams: DeoC
220 amino acids: PaperBLAST, CDD, Compare to cluster

A0A125YLW2 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Toxoplasma gondii
PFams: DeoC
262 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1Q2T258 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Haloarcula japonica
231 amino acids: PaperBLAST, CDD, Compare to cluster

D5AHU8 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus suis
PFams: DeoC
220 amino acids: PaperBLAST, CDD, Compare to cluster

b4381 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli K-12 substr. MG1655
DEOC_ECOLI / P0A6L0 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli (strain K12)
P0A6L0 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli
P0A6L0 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli (strain K12)
RF|NP_418798 phosphodeoxyriboaldolase from Escherichia coli K12
PFams: DeoC
259 amino acids: PaperBLAST, CDD, Compare to cluster

Q7WT44 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae
PFams: DeoC
259 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_THEKO / Q877I0 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Q877I0 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis
PFams: DeoC
224 amino acids: PaperBLAST, CDD, Compare to cluster

Q9AIP7 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Streptococcus mutans
PFams: DeoC
220 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_ACIB4 / B5IEU6 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aciduliprofundum boonei (strain DSM 19572 / T469)
PFams: DeoC
222 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_RHOE4 / C0ZUQ6 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Rhodococcus erythropolis (strain PR4 / NBRC 100887)
C0ZUQ6 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Rhodococcus erythropolis
PFams: DeoC
221 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_BACSU / P39121 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis (strain 168)
PFams: DeoC
223 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_THET8 / Q5SJ28 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: DeoC
220 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_STRP6 / Q5XA31 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
PFams: DeoC
223 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_SALTY / Q8ZJV8 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: DeoC
259 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_PYRAE / Q8ZXK7 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
PFams: DeoC
226 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_THEMA / Q9X1P5 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: DeoC
248 amino acids: PaperBLAST, CDD, Compare to cluster

DEOC_AERPE / Q9Y948 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
PFams: DeoC
235 amino acids: PaperBLAST, CDD, Compare to cluster

C0LSK9 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp. EA015
C0LSK9 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Yersinia sp. EA015
PFams: DeoC
223 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

DEOC_HUMAN / Q9Y315 Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens (Human)
Q9Y315 deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens
PFams: DeoC
318 amino acids: PaperBLAST, CDD
(similar to BRENDA::A0A125YLW2 from Cluster 1, but similarity to seed sequence is below thresholds)