GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for edd (phosphogluconate dehydratase) in trehalose catabolism

Or see other characterized proteins similar to edd

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Or cluster curated proteins matching a keyword

Definition of edd

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 603-608 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q1PAG1 phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis
PFams: ILVD_EDD
608 amino acids: PaperBLAST, CDD, Compare to cluster

b1851 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli K-12 substr. MG1655
EDD_ECOLI / P0ADF6 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli (strain K12)
P0ADF6 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli (strain K12)
RF|NP_416365 phosphogluconate dehydratase from Escherichia coli K12
PFams: ILVD_EDD
603 amino acids: PaperBLAST, CDD, Compare to cluster

EDD_ZYMMO / P21909 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
PFams: ILVD_EDD
607 amino acids: PaperBLAST, CDD, Compare to cluster