GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for edd (phosphogluconate dehydratase) in trehalose catabolism

Or see other characterized proteins similar to edd

Or see all steps for trehalose catabolism

Or cluster curated proteins matching a keyword

Definition of edd

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 603-608 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q1PAG1 phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis
PFams: ILVD_EDD
608 amino acids: PaperBLAST, CDD, Compare to cluster

b1851 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli K-12 substr. MG1655
P0ADF6 phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli (strain K12)
EDD_ECOLI / P0ADF6 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli (strain K12)
RF|NP_416365 phosphogluconate dehydratase from Escherichia coli K12
PFams: ILVD_EDD
603 amino acids: PaperBLAST, CDD, Compare to cluster

EDD_ZYMMO / P21909 Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
PFams: ILVD_EDD
607 amino acids: PaperBLAST, CDD, Compare to cluster