GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for malK (trehalose ABC transporter, ATPase component MalK) in trehalose catabolism

Or see other characterized proteins similar to malK

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Definition of malK

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 377-377 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.28 / Q00752 MsmK aka SMU.882, component of The raffinose/stachyose transporter, MsmEFGK (MalK (3.A.1.1.27) can probably substitute for MsmK; Webb et al., 2008). This system may also transport melibiose, isomaltotriose and sucrose as well as isomaltosaccharides from Streptococcus mutans
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 377 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.27 / Q8DT25 MalK, component of Maltose/Maltotriose/maltodextrin (up to 7 glucose units) transporters MalXFGK (MsmK (3.A.1.1.28) can probably substitute for MalK; Webb et al., 2008) from Streptococcus mutans
PFams: ABC_tran, OB_MalK, CysA_C_terminal, TOBE_2, TOBE
Heteromeric, 377 amino acids: PaperBLAST, CDD, Compare to cluster