GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to mglB

Finding the characterized proteins for mglB (glucose ABC transporter, substrate-binding component) in trehalose catabolism

Or see clustering for step mglB

Or see all steps for trehalose catabolism

Or cluster curated proteins matching a keyword

Definition of mglB

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 4 other characterized sequences. (Found 8 hits including self hits.)

Removing ignored items reduces this to 3 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for mglB.)

TC 3.A.1.2.22 / Q8G3R1 Probable sugar binding protein of ABC transporter for pentoses, component of ABC sugar transporter that plays a role in the probiotic benefits through acetate production from Bifidobacterium longum (strain NCC 2705)
PFams: Peripla_BP_4
Heteromeric, 385 amino acids: PaperBLAST, CDD, TCDB::Q8G3R1
43% identical to

TC 3.A.1.2.5 / P25548 CVE1 aka ChvE aka ATU2348 aka AGR_C_4267, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium tumefaciens
PFams: Peripla_BP_1, Peripla_BP_4
Heteromeric, 354 amino acids: PaperBLAST, CDD

TC 3.A.1.2.26 / A6LW10 D-xylose ABC transporter, periplasmic substrate-binding protein, component of Xylose transporter, XylFGH (XylF (R), 359 aas; XylG (C), 525 aas; XylH (M), 389 aas from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
PFams: Peripla_BP_4, Peripla_BP_1
Heteromeric, 359 amino acids: PaperBLAST, CDD, TCDB::A6LW10
41% identical to

PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens BS107
PFams: Peripla_BP_4, Peripla_BP_1, Peripla_BP_3
Heteromeric, 341 amino acids: PaperBLAST, CDD

b3566 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13; EC 7.5.2.10) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.2.4 / P37387 XylF aka XYLT aka B3566, component of Xylose porter from Escherichia coli
P37387 xylose ABC transporter periplasmic binding protein (EC 7.5.2.13) from Escherichia coli (strain K12)
GB|AAC76590.1 D-xylose ABC transporter, periplasmic D-xylose-binding protein from Escherichia coli K12
PFams: Peripla_BP_4, Peripla_BP_1
Heteromeric, 330 amino acids: PaperBLAST, CDD, CharProtDB::CH_003787
42% identical to

PGA1_262p00430 glucose transporter, periplasmic substrate-binding component from Phaeobacter inhibens BS107
PFams: Peripla_BP_4, Peripla_BP_1, Peripla_BP_3
Heteromeric, 341 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for mglB.)

SBPA_AZOBR / P54083 Multiple sugar-binding periplasmic protein SbpA; Sugar-binding protein A from Azospirillum brasilense
PFams: Peripla_BP_4
357 amino acids: PaperBLAST, CDD, SwissProt::P54083
73% identical to

TC 3.A.1.2.5 / P25548 CVE1 aka ChvE aka ATU2348 aka AGR_C_4267, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium tumefaciens
PFams: Peripla_BP_1, Peripla_BP_4
Heteromeric, 354 amino acids: PaperBLAST, CDD