GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for thuK (trehalose ABC transporter, ATPase component ThuK) in trehalose catabolism

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Definition of thuK

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 342-393 amino acids (4/5 heteromeric)

The first sequence in each cluster is the seed.

SUGC_MYCTU / P9WQI3 Trehalose import ATP-binding protein SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
TC 3.A.1.1.31 / O50454 PROBABLE SUGAR-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER SUGC, component of The trehalose-recycling ABC transporter, LpqY-SugA-SugB-SugC (essential for virulence) from Mycobacterium tuberculosis
PFams: ABC_tran, OB_MalK
Heteromeric, 393 amino acids: PaperBLAST, CDD, Compare to cluster

MALK_THELN / Q9YGA6 Trehalose/maltose import ATP-binding protein MalK; EC from Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)
PFams: ABC_tran, OB_MalK, TOBE_2
372 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.24 / TC 3.A.1.1.25 / Q72L52 Sugar-binding transport ATP-binding protein aka MalK1 aka TT_C0211, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 376 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.17 / Q9R9Q4 ThuK aka RB0314 aka SMB20328, component of Trehalose/maltose/sucrose porter (trehalose inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
SM_b20328 ABC transporter for D-Trehalose, ATPase component from Sinorhizobium meliloti 1021
PFams: ABC_tran, TOBE_2, TOBE
Heteromeric, 342 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.22 / Q9X103 MalK; aka Sugar ABC transporter, ATP-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins from Thermotoga maritima
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 369 amino acids: PaperBLAST, CDD, Compare to cluster