GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for treB (trehalose PTS system, EII-BC components TreB) in trehalose catabolism

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Definition of treB

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 470-494 amino acids (1/6 heteromeric)

The first sequence in each cluster is the seed.

A0A0H3F7X9 protein-Npi-phosphohistidine-trehalose phosphotransferase (EC 2.7.1.201); protein-Npi-phosphohistidine-sucrose phosphotransferase (EC 2.7.1.211) from Escherichia coli
PFams: PTS_EIIB, PTS_EIIC
473 amino acids: PaperBLAST, CDD, Compare to cluster

b4240 trehalose-specific PTS enzyme IIBC component (EC 2.7.1.201) from Escherichia coli K-12 substr. MG1655
PTTBC_ECOLI / P36672 PTS system trehalose-specific EIIBC component; EIIBC-Tre; EII-Tre; EC 2.7.1.201 from Escherichia coli (strain K12)
P36672 protein-Npi-phosphohistidine-trehalose phosphotransferase (EC 2.7.1.201) from Escherichia coli
TC 4.A.1.2.4 / P36672 Trehalose porter, TreB (IIBC) which can take up maltose by facilitated diffusion from Escherichia coli
P36672 trehalose-specific PTS enzyme IIBC component (EC 2.7.1.201) from Escherichia coli (strain K12)
PFams: PTS_EIIB, PTS_EIIC
Heteromeric, 473 amino acids: PaperBLAST, CDD, Compare to cluster

PTTBC_BACSU / P39794 PTS system trehalose-specific EIIBC component; EIIBC-Tre; EII-Tre; EC 2.7.1.201 from Bacillus subtilis (strain 168)
TC 4.A.1.2.8 / P39794 Trehalose porter, IIBC (TreP) (38% identical to 4.A.1.2.4) from Bacillus subtilis
PFams: PTS_EIIB, PTS_EIIC
470 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.1.2.13 / Q720G7 Trehalose PTS permease IIBC of 494 aas from Listeria monocytogenes serotype 4b (strain F2365)
PFams: PTS_EIIB, PTS_EIIC
494 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0N9WDQ5 Trehalose permease IIC protein
480 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1N7UR85 Trehalose permease IIC protein
480 amino acids: PaperBLAST, CDD, Compare to cluster