GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for catA (catechol 1,2-dioxygenase) in L-tryptophan catabolism

Or see other characterized proteins similar to catA

Or see all steps for L-tryptophan catabolism

Or cluster curated proteins matching a keyword

Definition of catA

Fetched 15 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 15 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 254-311 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P07773 catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter sp. ADP1
PFams: Dioxygenase_N, Dioxygenase_C
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8GAY6 catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.
PFams: Dioxygenase_N, Dioxygenase_C
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8GAZ6 catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.
PFams: Dioxygenase_N, Dioxygenase_C
300 amino acids: PaperBLAST, CDD, Compare to cluster

Q9F103 catechol 1,2-dioxygenase (EC 1.13.11.1) from Acinetobacter radioresistens
PFams: Dioxygenase_N, Dioxygenase_C
306 amino acids: PaperBLAST, CDD, Compare to cluster

CH_014952 catechol 1,2-dioxygenase 1; EC 1.13.11.1 from Acinetobacter lwoffii
PFams: Dioxygenase_N, Dioxygenase_C
311 amino acids: PaperBLAST, CDD, Compare to cluster

CH_014953 catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii
PFams: Dioxygenase_N, Dioxygenase_C
275 amino acids: PaperBLAST, CDD, Compare to cluster

HQD2_CANAL / P86029 Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
CH_122980 catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
PFams: Dioxygenase_N, Dioxygenase_C
303 amino acids: PaperBLAST, CDD, Compare to cluster

CATA_ACIGI / Q43984 Catechol 1,2-dioxygenase; EC 1.13.11.1 from Acinetobacter guillouiae (Acinetobacter genomosp. 11)
PFams: Dioxygenase_N, Dioxygenase_C
305 amino acids: PaperBLAST, CDD, Compare to cluster

Q0VH42 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
Q0VH42 catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
PFams: Dioxygenase_N, Dioxygenase_C
311 amino acids: PaperBLAST, CDD, Compare to cluster

A0F0B5 catechol-1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
A0F0B5 catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei
PFams: Dioxygenase_N, Dioxygenase_C
309 amino acids: PaperBLAST, CDD, Compare to cluster

Q8G9L3 chlorocatechol 1,2-dioxygenase 2 monomer from Rhodococcus opacus
Q8G9L3 catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus
PFams: Dioxygenase_N, Dioxygenase_C
254 amino acids: PaperBLAST, CDD, Compare to cluster

Q9AEQ0 subunit of catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas putida
PFams: Dioxygenase_N, Dioxygenase_C
311 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_23660 Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae WCS417
PFams: Dioxygenase_N, Dioxygenase_C
309 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_3822 Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens GW456-L13
PFams: Dioxygenase_N, Dioxygenase_C
309 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_23525 Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas fluorescens FW300-N2E3
PFams: Dioxygenase_N, Dioxygenase_C
309 amino acids: PaperBLAST, CDD, Compare to cluster