GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for catI (3-oxoadipate CoA-transferase subunit A (CatI)) in L-tryptophan catabolism

Or see other characterized proteins similar to catI

Or see all steps for L-tryptophan catabolism

Or cluster curated proteins matching a keyword

Definition of catI

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Pseudomonas fluorescens

PfGW456L13_4592 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens GW456-L13
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD (Cluster 1)

AO353_17195 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens FW300-N2E3
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas knackmussii

CATI_PSEKB / Q8VPF3 3-oxoadipate CoA-transferase subunit A; 3-oxoadipate:succinyl-CoA transferase subunit A; Beta-ketoadipate:succinyl-CoA transferase subunit A; EC 2.8.3.6 from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)
Q8VPF3 3-oxoadipate CoA-transferase (subunit 2/2) (EC 2.8.3.6) from Pseudomonas knackmussii
PFams: CoA_trans
Heteromeric, 282 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas simiae

PS417_06700 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas simiae WCS417
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD (Cluster 1)