GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for mhpD (2-hydroxypentadienoate hydratase) in L-tryptophan catabolism

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Definition of mhpD

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 222-279 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b0350 2-hydroxypentadienoate hydratase (EC 4.2.1.80) from Escherichia coli K-12 substr. MG1655
P77608 2-hydroxypentadienoate hydratase (EC 4.2.1.80) from Escherichia coli (strain K12)
MHPD_ECOLI / P77608 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Escherichia coli (strain K12)
P77608 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Escherichia coli K-12
PFams: FAA_hydrolase
269 amino acids: PaperBLAST, CDD, Compare to cluster

AMNF_PSESP / Q9KWS4 2-oxopent-4-enoate hydratase; 2-keto-4-pentenoate hydratase; EC 4.2.1.80 from Pseudomonas sp.
PFams: FAA_hydrolase
261 amino acids: PaperBLAST, CDD, Compare to cluster

MHPD_COMTE / Q9S156 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC 4.2.1.80 from Comamonas testosteroni (Pseudomonas testosteroni)
PFams: FAA_hydrolase
260 amino acids: PaperBLAST, CDD, Compare to cluster

Q38M38 2-oxopent-4-enoate hydratase (EC 4.2.1.80) from Comamonas testosteroni CNB-1
PFams: FAA_hydrolase
279 amino acids: PaperBLAST, CDD, Compare to cluster

P23107 2-oxopent-4-enoate hydratase subunit (EC 4.2.1.80) from Pseudomonas putida
222 amino acids: PaperBLAST, CDD, Compare to cluster