GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for nbaF (2-aminomuconate deaminase) in L-tryptophan catabolism

Or see other characterized proteins similar to nbaF

Or see all steps for L-tryptophan catabolism

Or cluster curated proteins matching a keyword

Definition of nbaF

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 142-143 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9KWS2 2-aminomuconate deaminase monomer (EC from Pseudomonas sp.
AMND_PSESP / Q9KWS2 2-aminomuconate deaminase; EC from Pseudomonas sp.
PFams: Ribonuc_L-PSP
142 amino acids: PaperBLAST, CDD, Compare to cluster

Q83V27 2-aminomuconate deaminase (EC from Pseudomonas fluorescens
PFams: Ribonuc_L-PSP
143 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

CNBH_COMTE / Q38M35 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC from Comamonas testosteroni (Pseudomonas testosteroni)
PFams: Amidase
462 amino acids: PaperBLAST, CDD