GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xylE (catechol 2,3-dioxygenase) in L-tryptophan catabolism

Or see other characterized proteins similar to xylE

Or see all steps for L-tryptophan catabolism

Or cluster curated proteins matching a keyword

Definition of xylE

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 303-314 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P06622 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida
Q7BH44 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp.
T1WIF8 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. HA14
P06622 subunit of catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida
PFams: Glyoxalase, Glyoxalase
307 amino acids: PaperBLAST, CDD, Compare to cluster

E7DDG2 catechol 2,3-dioxygenase (EC 1.13.11.2) from Planococcus sp. S5
PFams: Glyoxalase
307 amino acids: PaperBLAST, CDD, Compare to cluster

Q4J6K0 catechol 2,3-dioxygenase (EC 1.13.11.2) from Sulfolobus acidocaldarius
PFams: Glyoxalase, Glyoxalase
313 amino acids: PaperBLAST, CDD, Compare to cluster

Q52264 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida
PFams: Glyoxalase, Glyoxalase
314 amino acids: PaperBLAST, CDD, Compare to cluster

Q7WYF5 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp.
PFams: Glyoxalase, Glyoxalase
309 amino acids: PaperBLAST, CDD, Compare to cluster

Q842G7 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida
PFams: Glyoxalase, Glyoxalase
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8KLV4 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas stutzeri
PFams: Glyoxalase
307 amino acids: PaperBLAST, CDD, Compare to cluster

T1T0J4 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. HA10
PFams: Glyoxalase
303 amino acids: PaperBLAST, CDD, Compare to cluster

T1WJ05 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas sp. HA12
PFams: Glyoxalase, Glyoxalase
307 amino acids: PaperBLAST, CDD, Compare to cluster

Q9Z417 catechol 2,3-dioxygenase (EC 1.13.11.2) from Pseudomonas putida
Q9Z417 chlorocatechol 2,3-dioxygenase monomer from Pseudomonas putida
PFams: Glyoxalase, Glyoxalase
314 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

V5W6K5 catechol 2,3-dioxygenase (EC 1.13.11.2) from Saccharolobus solfataricus
PFams: Glyoxalase
335 amino acids: PaperBLAST, CDD

CADE_BACSU / P54721 Catechol-2,3-dioxygenase; Catechol-induced ring cleavage extradiol dioxygenase; EC 1.13.11.2 from Bacillus subtilis (strain 168)
PFams: Glyoxalase, Glyoxalase
285 amino acids: PaperBLAST, CDD

Q59220 catechol 2,3-dioxygenase (EC 1.13.11.2) from Ralstonia pickettii
PFams: Glyoxalase
314 amino acids: PaperBLAST, CDD