GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for xylF (2-hydroxymuconate semialdehyde hydrolase) in L-tryptophan catabolism

Or see other characterized proteins similar to xylF

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Or cluster curated proteins matching a keyword

Definition of xylF

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 281-282 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

G3KFX4 2-hydroxymuconate-6-semialdehyde hydrolase (EC from Pseudomonas sp.
PFams: Abhydrolase_1, Abhydrolase_6, Hydrolase_4
282 amino acids: PaperBLAST, CDD, Compare to cluster

P23106 2-hydroxymuconic semialdehyde hydrolase (EC from Pseudomonas putida
XYLF_PSEPU / P23106 2-hydroxymuconate semialdehyde hydrolase; HMSH; 2-hydroxymuconic semialdehyde hydrolase; EC from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: Abhydrolase_1, Abhydrolase_6, Hydrolase_4
281 amino acids: PaperBLAST, CDD, Compare to cluster