GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to atoA

Finding the characterized proteins for atoA (acetoacetyl-CoA transferase, A subunit) in L-tyrosine catabolism

Or see clustering for step atoA

Or see all steps for L-tyrosine catabolism

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Definition of atoA

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 13 other characterized sequences. (Found 17 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for atoA.)

Q01103 3-oxoadipate CoA-transferase (subunit 2/2) (EC 2.8.3.6) from Pseudomonas putida
Q01103 α subunit of β-ketoadipate succinyl-CoA transferase (EC 2.8.3.6) from Pseudomonas putida
GB|AAA25922.1 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 from Pseudomonas putida
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD, CharProtDB::CH_021928
51% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for atoA.)

Q63TL3 3-oxoacid CoA-transferase (EC 2.8.3.5) from Burkholderia pseudomallei
PFams: CoA_trans
234 amino acids: PaperBLAST, CDD, BRENDA::Q63TL3
78% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

RR42_RS06555 3-oxoacid CoA-transferase (EC 2.8.3.5) from Cupriavidus basilensis 4G11
PFams: CoA_trans
233 amino acids: PaperBLAST, CDD, reanno::Cup4G11:RR42_RS06555
78% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

Sama_1357 3-oxoacid CoA-transferase (EC 2.8.3.5) from Shewanella amazonensis SB2B
PFams: CoA_trans
233 amino acids: PaperBLAST, CDD, reanno::SB2B:6937187
70% identical to

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD

SCOT1_PIG / Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Sus scrofa (Pig)
Q29551 3-oxoacid CoA-transferase (EC 2.8.3.5) from Sus scrofa
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q29551
58% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

SCOT1_HUMAN / P55809 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Homo sapiens (Human)
P55809 3-oxoacid CoA-transferase (EC 2.8.3.5) from Homo sapiens
P55809 succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial (EC 2.8.3.5) from Homo sapiens
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::P55809
58% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

Q9D0K2 3-oxoacid CoA-transferase (EC 2.8.3.5) from Mus musculus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::Q9D0K2
57% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

SCOT1_RAT / B2GV06 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Rattus norvegicus (Rat)
B2GV06 3-oxoacid CoA-transferase (EC 2.8.3.5) from Rattus norvegicus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::B2GV06
57% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

Q9JJN4 3-oxoacid CoA-transferase (EC 2.8.3.5) from Mus musculus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::Q9JJN4
58% identical to

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD

SCOT_DROME / Q9W058 Succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial; 3-oxoacid CoA-transferase; EC 2.8.3.5 from Drosophila melanogaster (Fruit fly)
Q9W058 3-oxoacid CoA-transferase (EC 2.8.3.5) from Drosophila melanogaster
PFams: CoA_trans, CoA_trans
516 amino acids: PaperBLAST, CDD, SwissProt::Q9W058
55% identical to

Psest_1078 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD

SCO2B_MOUSE / Q9ESL0 Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial; 3-oxoacid CoA-transferase 2B; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase 2; SCOT-t2; EC 2.8.3.5 from Mus musculus (Mouse)
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q9ESL0
57% identical to

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD

SCOT2_HUMAN / Q9BYC2 Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase; SCOT-t; EC 2.8.3.5 from Homo sapiens (Human)
Q9BYC2 3-oxoacid CoA-transferase (EC 2.8.3.5) from Homo sapiens
PFams: CoA_trans, CoA_trans
517 amino acids: PaperBLAST, CDD, SwissProt::Q9BYC2
55% identical to

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD

SCO2A_RAT / Q5XIJ9 Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase 1; SCOT-t1; EC 2.8.3.5 from Rattus norvegicus (Rat)
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q5XIJ9
55% identical to

Pf6N2E2_2111 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans
Heteromeric, 232 amino acids: PaperBLAST, CDD