GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livF (L-valine ABC transporter, ATPase component 1 (LivF/BraG)) in L-valine catabolism

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Definition of livF

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 233-247 amino acids (3/4 heteromeric)

The first sequence in each cluster is the seed.

b3454 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P22731 LivF aka B3454, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P22731 branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF (EC 7.4.2.2) from Escherichia coli (strain K12)
GB|AAC76479.2 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF from Escherichia coli K12
PFams: ABC_tran
Heteromeric, 237 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.8 / P21630 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: ABC_tran, AAA_21
Heteromeric, 233 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.10 / Q8DQH7 ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
PFams: ABC_tran
Heteromeric, 236 amino acids: PaperBLAST, CDD, Compare to cluster

Q1MCU3 ATP-binding component of a broad range amino acid ABC transporter
247 amino acids: PaperBLAST, CDD, Compare to cluster