GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livH (L-valine ABC transporter, permease component 1 (LivH/BraD)) in L-valine catabolism

Or see other characterized proteins similar to livH

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Definition of livH

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 292-308 amino acids (3/4 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.4.8 / P21627 High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_2
Heteromeric, 307 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.10 / Q8DQI0 ABC transporter membrane-spanning permease-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM from Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
PFams: BPD_transp_2, FecCD
Heteromeric, 292 amino acids: PaperBLAST, CDD, Compare to cluster

Q1MCU0 Transmembrane component of a broad range amino acid ABC transporter
300 amino acids: PaperBLAST, CDD, Compare to cluster

b3457 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
TC 3.A.1.4.1 / P0AEX7 High-affinity branched-chain amino acid transport system permease protein LivH aka B3457, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
P0AEX7 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2) from Escherichia coli (strain K12)
CH_088640 high-affinity branched-chain amino acid ABC transporter, permease protein LivH from Escherichia coli K12
PFams: BPD_transp_2
Heteromeric, 308 amino acids: PaperBLAST, CDD, Compare to cluster