GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for ofo (branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused) in L-valine catabolism

Or see other characterized proteins similar to ofo

Or see all steps for L-valine catabolism

Or cluster curated proteins matching a keyword

Definition of ofo

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 1156-1197 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

RR42_RS19540 3-methyl-2-oxobutanoate:ferredoxin oxidoreductase (EC from Cupriavidus basilensis 4G11
PFams: TPP_enzyme_C, POR
1197 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3517 branched-chain ketoacid ferredoxin reductase (EC active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate from Pseudomonas stutzeri RCH2
PFams: POR
1156 amino acids: PaperBLAST, CDD, Compare to cluster