GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for prpF (methylaconitate isomerase) in L-valine catabolism

Or see other characterized proteins similar to prpF

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Or cluster curated proteins matching a keyword

Definition of prpF

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 396-443 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PRPF_SHEON / Q8EJW4 2-methyl-aconitate isomerase; Cis-trans isomerase; EC 5.3.3.- from Shewanella oneidensis (strain MR-1)
Q8EJW4 aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis
PFams: PrpF
397 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0U2X0E4 aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis
ADI1_USTMD / A0A0U2X0E4 Aconitate-delta-isomerase 1; Itaconic acid/2-hydroxyparaconate biosynthesis cluster protein ADI1; EC 5.-.-.- from Ustilago maydis (Corn smut fungus)
PFams: PrpF
443 amino acids: PaperBLAST, CDD, Compare to cluster

PRPF_CUPNE / Q937N7 2-methyl-aconitate isomerase; Cis-trans isomerase; EC 5.3.3.- from Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha)
PFams: PrpF
396 amino acids: PaperBLAST, CDD, Compare to cluster