GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xdhA (xylitol dehydrogenase) in xylitol catabolism

Or see other characterized proteins similar to xdhA

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Definition of xdhA

Fetched 24 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 22 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 338-368 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

DHSO_BACSU / Q06004 Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis (strain 168)
Q06004 glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis (strain 168)
GI|304153 L-iditol 2-dehydrogenase; EC 1.1.1.14 from Bacillus subtilis subsp. subtilis str. 168
PFams: ADH_N, ADH_zinc_N
353 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1B4XTS0 L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
362 amino acids: PaperBLAST, CDD, Compare to cluster

P22144 D-xylulose reductase (EC 1.1.1.9) from Scheffersomyces stipitis
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
363 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO1_YEAST / P35497 Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P35497 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Saccharomyces cerevisiae
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
357 amino acids: PaperBLAST, CDD, Compare to cluster

Q2K0Q7 D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q6KAV2 D-xylulose reductase (EC 1.1.1.9) from Blastobotrys adeninivorans
PFams: ADH_N, ADH_zinc_N
368 amino acids: PaperBLAST, CDD, Compare to cluster

XYL2_ASPOR / Q86ZV0 D-xylulose reductase A; Xylitol dehydrogenase A; EC 1.1.1.9 from Aspergillus oryzae (strain ATCC 42149 / RIB 40) (Yellow koji mold)
Q86ZV0 D-xylulose reductase (EC 1.1.1.9) from Aspergillus oryzae
Q86ZV0 NAD+-dependent xylitol dehydrogenase (EC 1.1.1.9) from Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GI|83774265 xylitol dehydrogenase; EC 1.1.1.9 from Aspergillus oryzae
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
358 amino acids: PaperBLAST, CDD, Compare to cluster

S6BFC0 D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus
PFams: ADH_N, ADH_zinc_N
363 amino acids: PaperBLAST, CDD, Compare to cluster

ELTD_MYCS2 / A0QXD8 Erythritol/L-threitol dehydrogenase; EC 1.1.1.- from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis)
A0QXD8 erythritol/L-threitol dehydrogenase (EC 1.1.1.56; EC 1.1.1.12; EC 1.1.1.9) from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
PFams: ADH_N, ADH_zinc_N
362 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_SHEEP / P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
354 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_RAT / P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
357 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_HUMAN / Q00796 Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens (Human)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
357 amino acids: PaperBLAST, CDD, Compare to cluster

XYL2_YEAST / Q07993 D-xylulose reductase; Xylitol dehydrogenase; XDH; EC 1.1.1.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
356 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_BOVIN / Q58D31 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bos taurus (Bovine)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
356 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_MOUSE / Q64442 Sorbitol dehydrogenase; SDH; SORD; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Mus musculus (Mouse)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
357 amino acids: PaperBLAST, CDD, Compare to cluster

DHSO_ARATH / Q9FJ95 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
364 amino acids: PaperBLAST, CDD, Compare to cluster

Q59545 xylitol dehydrogenase (EC 1.1.1.9) from Morganella morganii
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
338 amino acids: PaperBLAST, CDD, Compare to cluster

Q876R2 D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
363 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16050 xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans PsJN
PFams: ADH_N, ADH_zinc_N
365 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_0551 D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae DFL-12
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
347 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS17015 L-iditol 2-dehydrogenase (EC 1.1.1.14); D-xylulose reductase (EC 1.1.1.9) from Herbaspirillum seropedicae SmR1
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
345 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_17720 xylitol 2-dehydrogenase (EC 1.1.1.9) from Pseudomonas simiae WCS417
PFams: ADH_N, ADH_zinc_N
359 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q8GR61 D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans
PFams: adh_short, KR, Epimerase, adh_short_C2
262 amino acids: PaperBLAST, CDD

XYL2_PIG / P83049 D-xylulose reductase; Xylitol dehydrogenase; XDH; EC 1.1.1.9 from Sus scrofa (Pig)
134 amino acids: PaperBLAST, CDD