GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dopDH (2,5-dioxopentanonate dehydrogenase) in D-xylose catabolism

Or see other characterized proteins similar to dopDH

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of dopDH

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 19 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by cluster

Acidovorax GW101-3H11

Ac3H11_612 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) from Acidovorax sp. GW101-3H11
PFams: Aldedh
483 amino acids: PaperBLAST, CDD (Cluster 2)

Acinetobacter baylyi

KGSDH_ACIAD / Q6FFQ0 Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q6FFQ0 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Acinetobacter baylyi
Q6FFQ0 α-ketoglutarate semialdehyde dehydrogenase subunit (EC 1.2.1.26) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
PFams: Aldedh
526 amino acids: PaperBLAST, CDD (Cluster 1)

Azospirillum brasilense

KGSD3_AZOBR / Q08IB7 Alpha-ketoglutaric semialdehyde dehydrogenase 3; alphaKGSA dehydrogenase 3; 2,5-dioxovalerate dehydrogenase 3; KGSADH-III; EC 1.2.1.26 from Azospirillum brasilense
Q08IB7 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense
PFams: Aldedh
530 amino acids: PaperBLAST, CDD (Cluster 1)

KGSD2_AZOBR / Q08IC0 Alpha-ketoglutaric semialdehyde dehydrogenase 2; alphaKGSA dehydrogenase 2; 2,5-dioxovalerate dehydrogenase 2; KGSADH-II; EC 1.2.1.26 from Azospirillum brasilense
Q08IC0 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense
PFams: Aldedh
525 amino acids: PaperBLAST, CDD (Cluster 1)

KGSD1_AZOBR / Q1JUP4 Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 from Azospirillum brasilense
Q1JUP4 succinate-semialdehyde dehydrogenase (NAD+) (EC 1.2.1.24); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Azospirillum brasilense
PFams: Aldedh
481 amino acids: PaperBLAST, CDD (Cluster 2)

Bacillus subtilis

KGSDH_BACSU / P42236 Alpha-ketoglutaric semialdehyde dehydrogenase; alphaKGSA dehydrogenase; 2,5-dioxovalerate dehydrogenase; EC 1.2.1.26 from Bacillus subtilis (strain 168)
PFams: Aldedh
488 amino acids: PaperBLAST, CDD (Cluster 2)

Caulobacter vibrioides

A0A0H3C801 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Caulobacter vibrioides (strain NA1000 / CB15N)
PFams: Aldedh
478 amino acids: PaperBLAST, CDD (Cluster 2)

Haloferax volcanii

KGSDH_HALVD / D4GP41 Alpha-ketoglutarate semialdehyde dehydrogenase; KGSADH; EC 1.2.1.26 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
D4GP41 α-ketoglutarate semialdehyde dehydrogenase subunit (EC 1.2.1.26) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
PFams: Aldedh
482 amino acids: PaperBLAST, CDD (Cluster 2)

Herbaspirillum seropedicae

HSERO_RS00735 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Herbaspirillum seropedicae SmR1
PFams: Aldedh
529 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas aeruginosa

Q9I1Q0 2-ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Aldedh
527 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas fluorescens

Pf1N1B4_1109 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas fluorescens FW300-N1B4
PFams: Aldedh
481 amino acids: PaperBLAST, CDD (Cluster 2)

Pf6N2E2_612 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas fluorescens FW300-N2E2
PFams: Aldedh
526 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

Q88GW5 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Pseudomonas putida
PFams: Aldedh
526 amino acids: PaperBLAST, CDD (Cluster 1)

Q88NF5 α-ketoglutaric semialdehyde dehydrogenase subunit (EC 1.2.1.26) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Aldedh
525 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas simiae

PS417_11015 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas simiae WCS417
PFams: Aldedh
526 amino acids: PaperBLAST, CDD (Cluster 1)

PS417_04200 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) from Pseudomonas simiae WCS417
PFams: Aldedh
481 amino acids: PaperBLAST, CDD (Cluster 2)

Saccharolobus solfataricus

KGSDH_SACS2 / Q97UA1 2,5-dioxopentanoate dehydrogenase; Aldehyde dehydrogenase T; Alpha-ketoglutaric semialdehyde dehydrogenase AldhT; EC 1.2.1.26 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q97UA1 lactaldehyde dehydrogenase (EC 1.2.1.22); 2,5-dioxovalerate dehydrogenase (EC 1.2.1.26) from Saccharolobus solfataricus
Q97UA1 2,5-dioxopentanoate dehydrogenase subunit (EC 1.2.1.26) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
PFams: Aldedh
478 amino acids: PaperBLAST, CDD (Cluster 2)

Sinorhizobium meliloti

SM_b20891 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Sinorhizobium meliloti 1021
PFams: Aldedh
477 amino acids: PaperBLAST, CDD (Cluster 2)

Sphingomonas koreensis

Ga0059261_1896 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) from Sphingomonas koreensis DSMZ 15582
PFams: Aldedh
524 amino acids: PaperBLAST, CDD (Cluster 1)