Clusters of Characterized Proteins

Clustering the characterized proteins for gtsA (xylose ABC transporter, periplasmic substrate-binding component GtsA) in D-xylose catabolism

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Definition of gtsA

• Curated sequence GFF4324: ABC transporter for D-Glucose-6-Phosphate, periplasmic substrate-binding component
• Ignore hits to Q88P38 when looking for 'other' hits (GtsA (GLcE), component of Glucose porter, GtsABCD)
• Comment: GtsABCD from P. fluorescens WCS417 (PS417_22130:PS417_22145) is very important for utilization of both glycose and xylose. Similar systems in other Pseudomonas have been reported as glucose transporters. In P. putida, after enzymes for xylose catabolism were introduced and the strain was evolved for growth on xylose, GtsABCD were required for xylose utilization, although there were two point mutations in GtsA, so it is not certain if the wild-type P. putida GtsA binds xylose efficiently (see PMC3340264). The P. putida system is marked ignore. GtsA = PS417_22145 = GFF4324

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

PS417_22145 ABC transporter for D-Glucose-6-Phosphate, periplasmic substrate-binding component from Pseudomonas simiae WCS417
Heteromeric, 428 amino acids: PaperBLAST, CDD