Finding the characterized proteins for gtsB (xylose ABC transporter, permease component 1 GtsB) in D-xylose catabolism
Or see clustering for step gtsB
Or see all steps for D-xylose catabolism
Or cluster curated proteins matching a keyword
Definition of gtsB
Fetched 1 sequences
Running ublast to find other characterized proteins with 40% identity and 70% coverage
Found hits to 3 other characterized sequences. (Found 4 hits including self hits.)
Removing ignored items reduces this to 2 close sequences.
(Sequences that are similar to these will not be high-confidence candidates for gtsB.)
PfGW456L13_1895 ABC transporter for D-Galactose and D-Glucose, permease component 1 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, reanno::pseudo13_GW456_L13:PfGW456L13_1895
86% identical to
PS417_22140 ABC transporter for D-Glucose-6-Phosphate, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD
SMc04258 ABC transporter for D-Cellobiose and D-Salicin, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc04258
43% identical to
PS417_22140 ABC transporter for D-Glucose-6-Phosphate, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD
(Sequences that are similar to these will still be high-confidence candidates for gtsB.)
TC 3.A.1.1.30 / Q88P37 GtsB (GLcF), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, TCDB::Q88P37
90% identical to
PS417_22140 ABC transporter for D-Glucose-6-Phosphate, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD