Other Characterized Proteins Similar to gtsC

Finding the characterized proteins for gtsC (xylose ABC transporter, permease component 2 GtsC) in D-xylose catabolism

Or see clustering for step gtsC

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of gtsC

• Curated sequence GFF4322: ABC transporter for D-Glucose-6-Phosphate, permease component 1
• Ignore hits to Q88P36 when looking for 'other' hits (GtsC (GLcG), component of Glucose porter, GtsABCD)
• Comment: GtsC = PS417_22135 = GFF4322

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 4 other characterized sequences. (Found 5 hits including self hits.)

Removing ignored items reduces this to 3 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for gtsC.)

PfGW456L13_1896 ABC transporter for D-Galactose and D-Glucose, permease component 2 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, reanno::pseudo13_GW456_L13:PfGW456L13_1896
85% identical to

PS417_22135 ABC transporter for D-Glucose-6-Phosphate, permease component 1 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD

SMc04257 ABC transporter for D-Cellobiose and D-Salicin, permease component 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 305 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc04257
51% identical to

PS417_22135 ABC transporter for D-Glucose-6-Phosphate, permease component 1 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD

TC 3.A.1.1.24 / Q72KX4 Sugar transport system permease protein aka TT_C0326, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: BPD_transp_1
Heteromeric, 268 amino acids: PaperBLAST, CDD, TCDB::Q72KX4
47% identical to

PS417_22135 ABC transporter for D-Glucose-6-Phosphate, permease component 1 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for gtsC.)

TC 3.A.1.1.30 / Q88P36 GtsC (GLcG), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, TCDB::Q88P36
90% identical to

PS417_22135 ABC transporter for D-Glucose-6-Phosphate, permease component 1 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD