Other Characterized Proteins Similar to kdaD

Finding the characterized proteins for kdaD (2-keto-3-deoxy-D-arabinonate dehydratase) in D-xylose catabolism

Or see clustering for step kdaD

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of kdaD

• Curated proteins or TIGRFams with EC 4.2.1.141
• Comment: Watanabe et al (PMC6336799) show that C785_RS13680 = WP_039786859.1 = UPI00041852D2 is DKDP dehydratase (kdaD). Is 98% identical to HSERO_RS19360, which is included via reannotations.

Fetched 6 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 7 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for kdaD.)

SMa0247 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming from Sinorhizobium meliloti 1021
PFams: FAA_hydrolase
398 amino acids: PaperBLAST, CDD, reanno::Smeli:SMa0247
58% identical to

HSERO_RS19360 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae SmR1
PFams: FAA_hydrolase
391 amino acids: PaperBLAST, CDD