Other Characterized Proteins Similar to xdh

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to xdh

Finding the characterized proteins for xdh (D-xylose dehydrogenase) in D-xylose catabolism

Or see clustering for step xdh

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xdh

Curated proteins or TIGRFams with EC 1.1.1.179
Curated proteins or TIGRFams with EC 1.1.1.175
UniProt sequence A0A4R8NY47: SubName: Full=NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) {ECO:0000313|EMBL:TDY98647.1};
Comment: Watanabe et al 2019 (PMC6336799) show that C785_RS00860 = WP_034330287.1 = A0A4R8NY47 is D-xylose dehydrogenase (xdh). Another issue is that xdh from Haloferax volcanii (HVO_B0028; D4GP29) is reported to form xylono-1,4-lactone, (Sutter et al 2017, PMID:28854683), but this is not reflected in the databases, and for some (many?) xylose dehydrogenases, it is uncertain which lactone they form. So, both forms of D-xylose dehydrogenase are included in "xdh."

Fetched 15 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 9 other characterized sequences. (Found 23 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for xdh.)

Q5R5J5 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Pongo abelii
PFams: GFO_IDH_MocA
334 amino acids: PaperBLAST, CDD, BRENDA::Q5R5J5
95% identical to

DHDH_HUMAN / Q9UQ10 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Hum2DD; EC 1.3.1.20; EC 1.1.1.179 from Homo sapiens (Human)
PFams: GFO_IDH_MocA
334 amino acids: PaperBLAST, CDD

Q148L6 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Bos taurus
PFams: GFO_IDH_MocA
335 amino acids: PaperBLAST, CDD, BRENDA::Q148L6
89% identical to

DHDH_MACFA / Q9TQS6 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Cmo2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Macaca fascicularis (Crab-eating macaque) (Cynomolgus monkey)
DHDH_MACFU / Q7JK39 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; Jmo2DD; EC 1.3.1.20; EC 1.1.1.179 from Macaca fuscata fuscata (Japanese macaque)
Q9TQS6 D-xylose 1-dehydrogenase (NADP+) (EC 1.1.1.179); trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Macaca fascicularis
PFams: GFO_IDH_MocA
334 amino acids: PaperBLAST, CDD

Q9DBB8 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase (EC 1.3.1.20) from Mus musculus
PFams: GFO_IDH_MocA
333 amino acids: PaperBLAST, CDD, BRENDA::Q9DBB8
80% identical to

DHDH_CANLF / Q9TV68 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; Can2DD; D-xylose 1-dehydrogenase; D-xylose-NADP dehydrogenase; Dimeric dihydrodiol dehydrogenase; EC 1.3.1.20; EC 1.1.1.179 from Canis lupus familiaris (Dog) (Canis familiaris)
PFams: GFO_IDH_MocA
335 amino acids: PaperBLAST, CDD

HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae SmR1
PFams: adh_short, Epimerase, adh_short_C2
261 amino acids: PaperBLAST, CDD, reanno::HerbieS:HSERO_RS05210
53% identical to

CCNA_00864 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus NA1000
XDH_CAUVN / B8H1Z0 D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides (strain NA1000 / CB15N) (Caulobacter crescentus)
B8H1Z0 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides
PFams: adh_short, adh_short_C2
248 amino acids: PaperBLAST, CDD

SQD_PSEPU / P0DOV5 Sulfoquinovose 1-dehydrogenase; SQ dehydrogenase; EC 1.1.1.390 from Pseudomonas putida (Arthrobacter siderocapsulatus)
P0DOV5 sulfoquinovose 1-dehydrogenase (EC 1.1.1.390) from Pseudomonas putida
PFams: adh_short, KR, adh_short_C2
260 amino acids: PaperBLAST, CDD, SwissProt::P0DOV5
48% identical to

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD, reanno::acidovorax_3H11:Ac3H11_614
47% identical to

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS16920
46% identical to

Ga0059261_1894 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis DSMZ 15582
PFams: adh_short, Epimerase, adh_short_C2
259 amino acids: PaperBLAST, CDD

GALD_RHIME / Q92RN6 Probable galactose dehydrogenase GalD; EC 1.1.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Epimerase, KR, adh_short, adh_short_C2
256 amino acids: PaperBLAST, CDD, SwissProt::Q92RN6
46% identical to

Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. ANA-3
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD, reanno::ANA3:7024897
45% identical to