GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to xdhA

Finding the characterized proteins for xdhA (xylitol dehydrogenase) in D-xylose catabolism

Or see clustering for step xdhA

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xdhA

Fetched 24 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 17 other characterized sequences. (Found 41 hits including self hits.)

Removing ignored items reduces this to 11 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for xdhA.)

DHSO_CHICK / P0DMQ6 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; EC 1.1.1.- from Gallus gallus (Chicken)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
355 amino acids: PaperBLAST, CDD, SwissProt::P0DMQ6
79% identical to

DHSO_BOVIN / Q58D31 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bos taurus (Bovine)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
356 amino acids: PaperBLAST, CDD

Q1PSI9 L-idonate 5-dehydrogenase (EC 1.1.1.366) from Vitis vinifera
IDND_VITVI / Q1PSI9 L-idonate 5-dehydrogenase; EC 1.1.1.366 from Vitis vinifera (Grape)
Q1PSI9 L-idonate 5-dehydrogenase (EC 1.1.1.264); L-idonate 5-dehydrogenase (NAD+) (EC 1.1.1.366) from Vitis vinifera
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
366 amino acids: PaperBLAST, CDD, BRENDA::Q1PSI9
77% identical to

DHSO_ARATH / Q9FJ95 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
364 amino acids: PaperBLAST, CDD

DHSO_SCHPO / P36624 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Protein tms1; EC 1.1.1.- from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
RF|NP_595120.1 hexitol dehydrogenase (predicted); EC 1.1.1.- from Schizosaccharomyces pombe
PFams: ADH_N, ADH_zinc_N
360 amino acids: PaperBLAST, CDD, CharProtDB::CH_125269
48% identical to

DHSO1_YEAST / P35497 Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P35497 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Saccharomyces cerevisiae
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
357 amino acids: PaperBLAST, CDD

Q96V44 D-galactitol dehydrogenase (EC 1.1.1.12) from Hypocrea jecorina
LAD_HYPJE / Q96V44 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Hypocrea jecorina (Trichoderma reesei)
Q96V44 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Trichoderma reesei
PFams: ADH_N, ADH_zinc_N
377 amino acids: PaperBLAST, CDD, SwissProt::Q96V44
45% identical to

DHSO_SHEEP / P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
354 amino acids: PaperBLAST, CDD

LAD_NEUCR / Q7SI09 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q7SI09 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Neurospora crassa
PFams: ADH_N, ADH_zinc_N
363 amino acids: PaperBLAST, CDD, BRENDA::Q7SI09
44% identical to

DHSO_RAT / P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
357 amino acids: PaperBLAST, CDD

LAD_TALEM / C5J3R8 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Talaromyces emersonii (Thermophilic fungus) (Rasamsonia emersonii)
C5J3R8 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Rasamsonia emersonii
PFams: ADH_N, ADH_zinc_N
388 amino acids: PaperBLAST, CDD, SwissProt::C5J3R8
42% identical to

DHSO_BOVIN / Q58D31 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bos taurus (Bovine)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
356 amino acids: PaperBLAST, CDD

A2QAC0 L-arabitol dehydrogenase (EC 1.1.1.12) from Aspergillus niger (strain CBS 513.88 / FGSC A1513)
LAD_ASPNC / A2QAC0 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Aspergillus niger (strain CBS 513.88 / FGSC A1513)
A2QAC0 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Aspergillus niger
PFams: ADH_N, ADH_zinc_N
386 amino acids: PaperBLAST, CDD, BRENDA::A2QAC0
41% identical to

DHSO_BOVIN / Q58D31 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bos taurus (Bovine)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
356 amino acids: PaperBLAST, CDD

H6WCP4 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Aspergillus tubingensis
PFams: ADH_N, ADH_zinc_N
386 amino acids: PaperBLAST, CDD, BRENDA::H6WCP4
40% identical to

DHSO_BOVIN / Q58D31 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bos taurus (Bovine)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
356 amino acids: PaperBLAST, CDD

LAD_ASPOZ / Q763T4 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Aspergillus oryzae (Yellow koji mold)
Q763T4 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Aspergillus oryzae
PFams: ADH_N, ADH_zinc_N
382 amino acids: PaperBLAST, CDD, BRENDA::Q763T4
43% identical to

DHSO_SHEEP / P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep)
PFams: ADH_N, Glu_dehyd_C, AlaDh_PNT_C, ADH_zinc_N
354 amino acids: PaperBLAST, CDD

LAD_PENRW / B6HI95 L-arabinitol 4-dehydrogenase; LAD; EC 1.1.1.12 from Penicillium rubens (strain ATCC 28089 / DSM 1075 / NRRL 1951 / Wisconsin 54-1255) (Penicillium chrysogenum)
B6HI95 L-arabinitol 4-dehydrogenase (EC 1.1.1.12) from Penicillium chrysogenum
PFams: ADH_N, ADH_zinc_N
385 amino acids: PaperBLAST, CDD, SwissProt::B6HI95
41% identical to

S6BFC0 D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus
PFams: ADH_N, ADH_zinc_N
363 amino acids: PaperBLAST, CDD

A2R6Z2 D-galactitol dehydrogenase from Aspergillus niger (strain CBS 513.88 / FGSC A1513)
PFams: ADH_N, ADH_zinc_N
336 amino acids: PaperBLAST, CDD, metacyc::MONOMER-17163
40% identical to

DHSO_HUMAN / Q00796 Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens (Human)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
357 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for xdhA.)

Q07786 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Saccharomyces cerevisiae
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
357 amino acids: PaperBLAST, CDD, BRENDA::Q07786
99% identical to

DHSO1_YEAST / P35497 Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P35497 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Saccharomyces cerevisiae
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
357 amino acids: PaperBLAST, CDD

Q3C2L6 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Solanum lycopersicum
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
355 amino acids: PaperBLAST, CDD, BRENDA::Q3C2L6
83% identical to

DHSO_ARATH / Q9FJ95 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
364 amino acids: PaperBLAST, CDD

Q5I6M3 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Malus domestica
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
368 amino acids: PaperBLAST, CDD, BRENDA::Q5I6M3
79% identical to

DHSO_ARATH / Q9FJ95 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
364 amino acids: PaperBLAST, CDD

CH_123687 D-xylulose reductase from Candida albicans
PFams: ADH_N, ADH_zinc_N
360 amino acids: PaperBLAST, CDD, CharProtDB::CH_123687
74% identical to

P22144 D-xylulose reductase (EC 1.1.1.9) from Scheffersomyces stipitis
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
363 amino acids: PaperBLAST, CDD

Q5I6M4 L-iditol 2-dehydrogenase (EC 1.1.1.14) from Malus domestica
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
371 amino acids: PaperBLAST, CDD, BRENDA::Q5I6M4
74% identical to

DHSO_ARATH / Q9FJ95 Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N, ADH_zinc_N_2
364 amino acids: PaperBLAST, CDD

A2QM95 sorbitol dehydrogenase (EC 1.1.1.14) from Aspergillus niger (strain CBS 513.88 / FGSC A1513)
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
369 amino acids: PaperBLAST, CDD, metacyc::MONOMER-17164
52% identical to

Q876R2 D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina
PFams: ADH_N, Glu_dehyd_C, ADH_zinc_N
363 amino acids: PaperBLAST, CDD