GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xylA (xylose isomerase) in D-xylose catabolism

Or see other characterized proteins similar to xylA

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xylA

Fetched 20 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 20 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 387-449 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B7SLY1 xylose isomerase (EC 5.3.1.5) from Orpinomyces sp.
437 amino acids: PaperBLAST, CDD, Compare to cluster

A1A0H0 xylose isomerase (EC 5.3.1.5) from Bifidobacterium adolescentis
449 amino acids: PaperBLAST, CDD, Compare to cluster

C7G532 xylose isomerase (EC 5.3.1.5) from Vibrio sp.
439 amino acids: PaperBLAST, CDD, Compare to cluster

D2DK62 xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus
PFams: AP_endonuc_2
438 amino acids: PaperBLAST, CDD, Compare to cluster

D9SR73 xylose isomerase (EC 5.3.1.5) from Clostridium cellulovorans
439 amino acids: PaperBLAST, CDD, Compare to cluster

P26997 xylose isomerase (EC 5.3.1.5) from Thermus thermophilus
PFams: AP_endonuc_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

Q8A9M2 xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron
438 amino acids: PaperBLAST, CDD, Compare to cluster

Q9P8C9 xylose isomerase (EC 5.3.1.5) from Piromyces sp. E2
437 amino acids: PaperBLAST, CDD, Compare to cluster

b3565 xylose isomerase (EC 5.3.1.5) from Escherichia coli K-12 substr. MG1655
P00944 xylose isomerase (EC 5.3.1.5) from Escherichia coli (strain K12)
GB|AAC76589.1 xylose isomerase; EC 5.3.1.5 from Escherichia coli K12
440 amino acids: PaperBLAST, CDD, Compare to cluster

XYLA_LACBR / P29443 Xylose isomerase; EC 5.3.1.5 from Lactobacillus brevis
449 amino acids: PaperBLAST, CDD, Compare to cluster

XYLA_THESA / P30435 Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum
439 amino acids: PaperBLAST, CDD, Compare to cluster

G2TH70 xylA (EC 5.3.1.5) from Bacillus coagulans 36D1
445 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) from Burkholderia phytofirmans PsJN
440 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_1876 Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis KMM 6221, DSM 17526
437 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS27025 Xylose isomerase (EC 5.3.1.5) from Klebsiella michiganensis M5al
440 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c14000 Xylose isomerase (EC 5.3.1.5) from Phaeobacter inhibens BS107
434 amino acids: PaperBLAST, CDD, Compare to cluster

SMc03163 Xylose isomerase (EC 5.3.1.5) from Sinorhizobium meliloti 1021
436 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_10945 Xylose isomerase (EC 5.3.1.5) from Pseudomonas simiae WCS417
438 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_28500 Xylose isomerase (EC 5.3.1.5) from Pseudomonas fluorescens FW300-N2C3
438 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

P24300 xylose isomerase (EC 5.3.1.5) from Streptomyces rubiginosus
PFams: AP_endonuc_2
388 amino acids: PaperBLAST, CDD
(similar to BRENDA::P26997 from Cluster 1, but similarity to seed sequence is below thresholds)