Clusters of Characterized Proteins

Clustering the characterized proteins for xylC (xylonolactonase) in D-xylose catabolism

Or see other characterized proteins similar to xylC

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xylC

• Curated proteins or TIGRFams with EC 3.1.1.110
• Curated proteins or TIGRFams with EC 3.1.1.68
• Ignore hits to items matching 3.1.1.15 when looking for 'other' hits
• Comment: EC 3.1.1.110 is the 1,5-lactonase; EC 3.1.1.68 is the 1,4-lactonase; both are included in "xylC." xylono-1,4-lactonase is sometimes given EC 3.1.1.15 (L-arabinino-1,4-lactonase) so ignore those; indeed HVO_B0030 = metacyc::MONOMER-20630 has both 1,4-lactonase activities (PMID:28854683).

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 289-295 amino acids (not heteromeric)

A0A0H3C6P8 xylono-1,5-lactonase (EC 3.1.1.110) from Caulobacter vibrioides (strain NA1000 / CB15N)
PFams: SGL
289 amino acids: PaperBLAST, CDD, Compare to cluster

D4GP31 xylono-1,5-lactonase (EC 3.1.1.110) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
PFams: SGL
291 amino acids: PaperBLAST, CDD, Compare to cluster

Ga0059261_1893 Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis DSMZ 15582
PFams: SGL
295 amino acids: PaperBLAST, CDD, Compare to cluster