GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for xylC (xylonolactonase) in D-xylose catabolism

Or see other characterized proteins similar to xylC

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xylC

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Caulobacter vibrioides

A0A0H3C6P8 xylono-1,5-lactonase (EC from Caulobacter vibrioides (strain NA1000 / CB15N)
PFams: SGL
289 amino acids: PaperBLAST, CDD (Cluster 1)

Haloferax volcanii

D4GP31 xylono-1,5-lactonase (EC from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
PFams: SGL
291 amino acids: PaperBLAST, CDD (Cluster 1)

Sphingomonas koreensis

Ga0059261_1893 Xylonolactonase (EC from Sphingomonas koreensis DSMZ 15582
PFams: SGL
295 amino acids: PaperBLAST, CDD (Cluster 1)