GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for xylH (ABC transporter for xylose, permease component xylH) in D-xylose catabolism

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Definition of xylH

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 313-398 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.2.26 / A6LW12 Monosaccharide-transporting ATPase, component of Xylose transporter, XylFGH (XylF (R), 359 aas; XylG (C), 525 aas; XylH (M), 389 aas from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
PFams: BPD_transp_2
Heteromeric, 389 amino acids: PaperBLAST, CDD, Compare to cluster

b3568 xylose ABC transporter membrane subunit (EC; EC from Escherichia coli K-12 substr. MG1655
TC 3.A.1.2.4 / P0AGI4 Xylose transport system permease protein XylH aka B3568, component of Xylose porter from Escherichia coli
P0AGI4 xylose ABC transporter membrane subunit (EC from Escherichia coli (strain K12)
RF|NP_418025 D-xylose ABC transporter, permease protein from Escherichia coli K12
PFams: BPD_transp_2
Heteromeric, 393 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.2.20 / G4FGN4 Putative beta-xyloside ABC transporter, permease component, component of Glucose porter. Also bind xylose (Boucher and Noll 2011). Induced by glucose (Frock et al. 2012). Directly regulated by glucose-responsive regulator GluR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 313 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.2.5 / O05177 GguB aka ATU2346 aka AGR_C_4262, component of Multiple sugar (arabinose, xylose, galactose, glucose, fucose) putative porter from Agrobacterium radiobacter
PFams: BPD_transp_2
Heteromeric, 398 amino acids: PaperBLAST, CDD, Compare to cluster